Literature DB >> 27081676

ANATOMICAL MNEMONICS OF THE GENETIC CODE: A FUNCTIONAL ICOSAHEDRON AND THE VIGESIMAL SYSTEM OF THE MAYA TO REPRESENT THE TWENTY PROTEINOGENIC AMINO ACIDS.

Fernando Castro-Chavez1.   

Abstract

In programming and bioinformatics, the graphical interface is vital to describe and to abbreviate aspects and concepts of the physical world. The Mayan Culture developed the vigesimal system, a numerical system based on their count of fingers and toes. My objective is to equate the Mayan system and their numerical representation to the twenty amino acids according to size, except for the number one, represented by a dot, that here is given to cysteine, which acts as glue among peptides as one of its properties; in such a way, two vertical dots will be easily used to represent its related selenocysteine. The Mayan numerical system included the zero, represented by the Maya with an empty shell that here is used to represent the stop codons. On the other hand, the Chinese had a binary numerical system, similar to the binary comparisons of the three properties of Nucleotides within the double helix: H-Bonds, C-Rings and Tautomerism, called the I Ching which here is applied to the natural groups of amino acids that result of the 64-codons compared in binary in their H-Bonds versus their C-Rings, used here to successfully represent the mature sequence of the glucagon amino acids. Additional anatomical tools for the mnemonics of the genetic code and of its amino acid groups are also presented, as well as a functional icosahedron to represent them. Concluding, tools are presented for the visual analysis of proteins and peptide sequencing in bioinformatics and education to teach the genetic code and its resulting amino acids, plus their numerical systems.

Keywords:  Vigesimal system; chinese; glucagon; i ching; maya; yin/yang; yucatan

Year:  2016        PMID: 27081676      PMCID: PMC4828969     

Source DB:  PubMed          Journal:  J Biol Nat        ISSN: 2395-5376


  11 in total

1.  The amino acid sequence of glucagon.

Authors:  W W BROMER; L G SINN; A STAUB; O K BEHRENS
Journal:  Diabetes       Date:  1957 May-Jun       Impact factor: 9.461

2.  The rules of variation: amino acid exchange according to the rotating circular genetic code.

Authors:  Fernando Castro-Chavez
Journal:  J Theor Biol       Date:  2010-04-03       Impact factor: 2.691

3.  Defragged Binary I Ching Genetic Code Chromosomes Compared to Nirenberg's and Transformed into Rotating 2D Circles and Squares and into a 3D 100% Symmetrical Tetrahedron Coupled to a Functional One to Discern Start From Non-Start Methionines through a Stella Octangula.

Authors:  Fernando Castro-Chavez
Journal:  J Proteome Sci Comput Biol       Date:  2012

Review 4.  The molecular biology of selenocysteine.

Authors:  Jonathan N Gonzalez-Flores; Sumangala P Shetty; Aditi Dubey; Paul R Copeland
Journal:  Biomol Concepts       Date:  2013-08

5.  File Compression and Expansion of the Genetic Code by the use of the Yin/Yang Directions to find its Sphered Cube.

Authors:  Fernando Castro-Chavez
Journal:  J Biodivers Bioprospect Dev       Date:  2014-07

6.  The Rules of Variation Expanded, Implications for the Research on Compatible Genomics.

Authors:  Fernando Castro-Chavez
Journal:  Biosemiotics       Date:  2011-05-12       Impact factor: 0.711

7.  A Tetrahedral Representation of the Genetic Code Emphasizing Aspects of Symmetry.

Authors:  Fernando Castro-Chavez
Journal:  BIOcomplexity       Date:  2012-06-29

8.  The Croonian lecture, 1966. The genetic code.

Authors:  F H Crick
Journal:  Proc R Soc Lond B Biol Sci       Date:  1967-04-18

9.  Most Used Codons per Amino Acid and per Genome in the Code of Man Compared to Other Organisms According to the Rotating Circular Genetic Code.

Authors:  Fernando Castro-Chavez
Journal:  Neuroquantology       Date:  2011-12

10.  Characterization of mammalian selenoproteomes.

Authors:  Gregory V Kryukov; Sergi Castellano; Sergey V Novoselov; Alexey V Lobanov; Omid Zehtab; Roderic Guigó; Vadim N Gladyshev
Journal:  Science       Date:  2003-05-30       Impact factor: 47.728

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