Literature DB >> 270713

2-Aminopurine-induced mutagenesis in T4 bacteriophage: a model relating mutation frequency to 2-aminopurine incorporation in DNA.

M F Goodman, R Hopkins, W C Gore.   

Abstract

We measured the in vivo incorporation of 2-aminopurine into DNA of T4 bacteriophage allelic for gene 43 (DNA polymerase), mutator (L56), 43+, and antimutator (L141). The magnitude of incorporation (mol/mol of Thy) was 1/1500 in L56, 1/1600 in 43+, and 1/8900 in L141. The incorporation ratio L56:43+:L141 in vivo was equal to that mediated by the purified DNA polymerases of these allelic phages in vitro. A model for 2-aminopurine-induced A-T in equilibrium G-C transitions is discussed. The model is used to predict the magnitudes of replication errors (C mispairing with a template 2-aminopurine) and incorporation errors (2-aminopurine mispairing with a template C) per round of replication and to investigate the asymmetry in 2-aminopurine-induced transitions favoring the A-T leads to G-C pathway over G-C leads to A-T. We suggest that the fidelity of L56 and L141 DNA polymerases exemplifies one-step and two-step editing, respectively.

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Year:  1977        PMID: 270713      PMCID: PMC432044          DOI: 10.1073/pnas.74.11.4806

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  19 in total

1.  Complementary base pairing and the origin of substitution mutations.

Authors:  M D Topal; J R Fresco
Journal:  Nature       Date:  1976-09-23       Impact factor: 49.962

2.  Studies on the biochemical basis of spontaneous mutation. I. A comparison of the deoxyribonucleic acid polymerases of mutator, antimutator, and wild type strains of bacteriophage T4.

Authors:  N Muzyczka; R L Poland; M J Bessman
Journal:  J Biol Chem       Date:  1972-11-25       Impact factor: 5.157

3.  On the role of deoxyribonucleic acid polymerase in determining mutation rates. Characterization of the defect in the T4 deoxyribonucleic acid polymerase caused by the ts L88 mutation.

Authors:  M S Hershfield
Journal:  J Biol Chem       Date:  1973-02-25       Impact factor: 5.157

4.  Studies on the biochemical basis of spontaneous mutation. II. The incorporation of a base and its analogue into DNA by wild-type, mutator and antimutator DNA polymerases.

Authors:  M J Bessman; N Muzyczka; M F Goodman; R L Schnaar
Journal:  J Mol Biol       Date:  1974-09-15       Impact factor: 5.469

5.  Enzymatic synthesis of deoxyribonucleic acid. 36. A proofreading function for the 3' leads to 5' exonuclease activity in deoxyribonucleic acid polymerases.

Authors:  D Brutlag; A Kornberg
Journal:  J Biol Chem       Date:  1972-01-10       Impact factor: 5.157

6.  Kinetic proofreading: a new mechanism for reducing errors in biosynthetic processes requiring high specificity.

Authors:  J J Hopfield
Journal:  Proc Natl Acad Sci U S A       Date:  1974-10       Impact factor: 11.205

7.  Genetic control of mutation rates in bacteriophageT4.

Authors:  J W Drake; E F Allen; S A Forsberg; R M Preparata; E O Greening
Journal:  Nature       Date:  1969-03-22       Impact factor: 49.962

8.  The function of T4 DNA polymerase.

Authors:  J F Speyer; D Rosenberg
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1968

9.  The structural gene for deoxyribonucleic acid polymerase in bacteriophages T4 and T5.

Authors:  A De Waard; A V Paul; I R Lehman
Journal:  Proc Natl Acad Sci U S A       Date:  1965-10       Impact factor: 11.205

10.  Mutator mutations in bacteriophage T4 gene 32 (DNA unwinding protein).

Authors:  R E Koch; M K McGaw; J W Drake
Journal:  J Virol       Date:  1976-08       Impact factor: 5.103

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  12 in total

1.  Mismatch repair causes the dynamic release of an essential DNA polymerase from the replication fork.

Authors:  Andrew D Klocko; Jeremy W Schroeder; Brian W Walsh; Justin S Lenhart; Margery L Evans; Lyle A Simmons
Journal:  Mol Microbiol       Date:  2011-09-30       Impact factor: 3.501

Review 2.  DNA polymerase fidelity: from genetics toward a biochemical understanding.

Authors:  M F Goodman; K D Fygenson
Journal:  Genetics       Date:  1998-04       Impact factor: 4.562

3.  The effect of the 3',5' thiophosphoryl linkage on the exonuclease activities of T4 polymerase and the Klenow fragment.

Authors:  A P Gupta; P A Benkovic; S J Benkovic
Journal:  Nucleic Acids Res       Date:  1984-07-25       Impact factor: 16.971

4.  Kinetic measurement of 2-aminopurine X cytosine and 2-aminopurine X thymine base pairs as a test of DNA polymerase fidelity mechanisms.

Authors:  S M Watanabe; M F Goodman
Journal:  Proc Natl Acad Sci U S A       Date:  1982-11       Impact factor: 11.205

5.  Deoxyribonucleotide pools, base pairing, and sequence configuration affecting bromodeoxyuridine- and 2-aminopurine-induced mutagenesis.

Authors:  R L Hopkins; M F Goodman
Journal:  Proc Natl Acad Sci U S A       Date:  1980-04       Impact factor: 11.205

6.  Investigating local conformations of double-stranded DNA by low-energy circular dichroism of pyrrolo-cytosine.

Authors:  Neil P Johnson; Walter A Baase; Peter H von Hippel
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-09       Impact factor: 11.205

7.  In vivo studies of repair of 2-aminopurine in Escherichia coli.

Authors:  R H Grafstrom; A Amsterdam; K Zachariasewycz
Journal:  J Bacteriol       Date:  1988-08       Impact factor: 3.490

8.  Mechanism of 2-aminopurine mutagenesis in mouse T-lymphosarcoma cells.

Authors:  I W Caras; M A MacInnes; D H Persing; P Coffino; D W Martin
Journal:  Mol Cell Biol       Date:  1982-09       Impact factor: 4.272

9.  Low-energy circular dichroism of 2-aminopurine dinucleotide as a probe of local conformation of DNA and RNA.

Authors:  Neil P Johnson; Walter A Baase; Peter H Von Hippel
Journal:  Proc Natl Acad Sci U S A       Date:  2004-03-01       Impact factor: 11.205

10.  On the molecular basis of transition mutations: frequencies of forming 2-aminopurine.cytosine and adenine.cytosine base mispairs in vitro.

Authors:  S M Watanabe; M F Goodman
Journal:  Proc Natl Acad Sci U S A       Date:  1981-05       Impact factor: 11.205

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