Literature DB >> 27062886

The "lnc" between 3D chromatin structure and X chromosome inactivation.

Amy Pandya-Jones1, Kathrin Plath2.   

Abstract

The long non-coding RNA Xist directs a remarkable instance of developmentally regulated, epigenetic change known as X Chromosome Inactivation (XCI). By spreading in cis across the X chromosome from which it is expressed, Xist RNA facilitates the creation of a heritably silent, heterochromatic nuclear territory that displays a three-dimensional structure distinct from that of the active X chromosome. How Xist RNA attaches to and propagates across a chromosome and its influence over the three-dimensional (3D) structure of the inactive X are aspects of XCI that have remained largely unclear. Here, we discuss studies that have made significant contributions towards answering these open questions.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Chromosome conformation; Heterochromatin; Non-coding RNA; X chromosome inactivation Xist

Mesh:

Substances:

Year:  2016        PMID: 27062886      PMCID: PMC4955722          DOI: 10.1016/j.semcdb.2016.04.002

Source DB:  PubMed          Journal:  Semin Cell Dev Biol        ISSN: 1084-9521            Impact factor:   7.727


  112 in total

1.  Chromosomal silencing and localization are mediated by different domains of Xist RNA.

Authors:  Anton Wutz; Theodore P Rasmussen; Rudolf Jaenisch
Journal:  Nat Genet       Date:  2002-01-07       Impact factor: 38.330

Review 2.  Accessing genetic variation: genotyping single nucleotide polymorphisms.

Authors:  A C Syvänen
Journal:  Nat Rev Genet       Date:  2001-12       Impact factor: 53.242

Review 3.  LNA: a versatile tool for therapeutics and genomics.

Authors:  Michael Petersen; Jesper Wengel
Journal:  Trends Biotechnol       Date:  2003-02       Impact factor: 19.536

4.  Combined immunofluorescence, RNA fluorescent in situ hybridization, and DNA fluorescent in situ hybridization to study chromatin changes, transcriptional activity, nuclear organization, and X-chromosome inactivation.

Authors:  Julie Chaumeil; Sandrine Augui; Jennifer C Chow; Edith Heard
Journal:  Methods Mol Biol       Date:  2008

5.  Attenuated spread of X-inactivation in an X;autosome translocation.

Authors:  Bilyana C Popova; Takashi Tada; Nobuo Takagi; Neil Brockdorff; Tatyana B Nesterova
Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-05       Impact factor: 11.205

6.  Stable C0T-1 repeat RNA is abundant and is associated with euchromatic interphase chromosomes.

Authors:  Lisa L Hall; Dawn M Carone; Alvin V Gomez; Heather J Kolpa; Meg Byron; Nitish Mehta; Frank O Fackelmayer; Jeanne B Lawrence
Journal:  Cell       Date:  2014-02-27       Impact factor: 41.582

7.  A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.

Authors:  Suhas S P Rao; Miriam H Huntley; Neva C Durand; Elena K Stamenova; Ivan D Bochkov; James T Robinson; Adrian L Sanborn; Ido Machol; Arina D Omer; Eric S Lander; Erez Lieberman Aiden
Journal:  Cell       Date:  2014-12-11       Impact factor: 41.582

8.  Primary and secondary nonrandom X chromosome inactivation in early female mouse embryos carrying Searle's translocation T(X; 16)16H.

Authors:  N Takagi
Journal:  Chromosoma       Date:  1980       Impact factor: 4.316

9.  Quantitative RT-PCR assays show Xist RNA levels are low in mouse female adult tissue, embryos and embryoid bodies.

Authors:  C H Buzin; J R Mann; J Singer-Sam
Journal:  Development       Date:  1994-12       Impact factor: 6.868

Review 10.  Cis- and trans-regulation in X inactivation.

Authors:  Joke G van Bemmel; Hegias Mira-Bontenbal; Joost Gribnau
Journal:  Chromosoma       Date:  2015-07-22       Impact factor: 4.316

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  8 in total

1.  SMCHD1 Merges Chromosome Compartments and Assists Formation of Super-Structures on the Inactive X.

Authors:  Chen-Yu Wang; Teddy Jégu; Hsueh-Ping Chu; Hyun Jung Oh; Jeannie T Lee
Journal:  Cell       Date:  2018-06-07       Impact factor: 41.582

Review 2.  The Role of Xist in X-Chromosome Dosage Compensation.

Authors:  Anna Sahakyan; Yihao Yang; Kathrin Plath
Journal:  Trends Cell Biol       Date:  2018-06-14       Impact factor: 20.808

3.  Autosomal sex-associated co-methylated regions predict biological sex from DNA methylation.

Authors:  Evan Gatev; Amy M Inkster; Gian Luca Negri; Chaini Konwar; Alexandre A Lussier; Anne Skakkebaek; Marla B Sokolowski; Claus H Gravholt; Erin C Dunn; Michael S Kobor; Maria J Aristizabal
Journal:  Nucleic Acids Res       Date:  2021-09-20       Impact factor: 16.971

Review 4.  The control of polycomb repressive complexes by long noncoding RNAs.

Authors:  Jackson B Trotman; Keean C A Braceros; Rachel E Cherney; McKenzie M Murvin; J Mauro Calabrese
Journal:  Wiley Interdiscip Rev RNA       Date:  2021-04-16       Impact factor: 9.957

Review 5.  Structural aspects of the inactive X chromosome.

Authors:  Giancarlo Bonora; Christine M Disteche
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-11-05       Impact factor: 6.237

6.  Megadomains and superloops form dynamically but are dispensable for X-chromosome inactivation and gene escape.

Authors:  John E Froberg; Stefan F Pinter; Andrea J Kriz; Teddy Jégu; Jeannie T Lee
Journal:  Nat Commun       Date:  2018-11-27       Impact factor: 14.919

7.  PRC1 collaborates with SMCHD1 to fold the X-chromosome and spread Xist RNA between chromosome compartments.

Authors:  Chen-Yu Wang; David Colognori; Hongjae Sunwoo; Danni Wang; Jeannie T Lee
Journal:  Nat Commun       Date:  2019-07-03       Impact factor: 14.919

8.  Attrition of X Chromosome Inactivation in Aged Hematopoietic Stem Cells.

Authors:  Ani Grigoryan; Johannes Pospiech; Stephen Krämer; Daniel Lipka; Thomas Liehr; Hartmut Geiger; Hiroshi Kimura; Medhanie A Mulaw; Maria Carolina Florian
Journal:  Stem Cell Reports       Date:  2021-04-01       Impact factor: 7.765

  8 in total

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