Literature DB >> 27059997

Genetic variation study of 12 X chromosomal STR in central Thailand population.

Kornkiat Vongpaisarnsin1,2, Achara Boonlert3, Kawin Rasmeepaisarn4, Piyawan Dangkao3.   

Abstract

Genetic data from 12 short tandem repeats (STR) on the X chromosome are currently used in forensics studies to resolve issues related to complex kinship or when data is missing or ambiguous. In this study, we genotyped these 12 X chromosome STR in DNA collected from individuals from central Thailand (n = 391, 282 men and 109 women) and used this information to calculate allele and haplotype frequencies as well as forensic parameters for kinship calculations. Polymorphism information contents of the loci were range from 0.5283-0.9247, and powers of discrimination in females and males were 0.7666-0.9905 and 0.6085-0.9291, respectively. A diallelic pattern was observed at the locus DXS7132. Moreover, a comparison of genetic distance revealed a close relationship within Asian countries. Our results indicate that the X chromosomal short tandem repeat (X-STR) multiplex system provides highly informative genetic data and could be advantageous in forensic studies.

Entities:  

Keywords:  Central Thailand; Haplotype; Linkage disequilibrium; Short tandem repeat; X chromosome

Mesh:

Year:  2016        PMID: 27059997     DOI: 10.1007/s00414-016-1363-y

Source DB:  PubMed          Journal:  Int J Legal Med        ISSN: 0937-9827            Impact factor:   2.686


  10 in total

Review 1.  Use of X-linked markers for forensic purposes.

Authors:  R Szibor; M Krawczak; S Hering; J Edelmann; E Kuhlisch; D Krause
Journal:  Int J Legal Med       Date:  2003-02-15       Impact factor: 2.686

2.  Genetic analysis of eight population groups living in Taiwan using a 13 X-chromosomal STR loci multiplex system.

Authors:  Hsiao-Lin Hwa; James Chun-I Lee; Yih-Yuan Chang; Hsiang-Yi Yin; Ya-Hui Chen; Li-Hui Tseng; Yi-Ning Su; Tsang-Ming Ko
Journal:  Int J Legal Med       Date:  2010-04-29       Impact factor: 2.686

3.  Genetic study of 12 X-STRs in Malay population living in and around Kuala Lumpur using Investigator Argus X-12 kit.

Authors:  Michinaga Samejima; Yasutaka Nakamura; Phrabhakaran Nambiar; Kiyoshi Minaguchi
Journal:  Int J Legal Med       Date:  2012-05-15       Impact factor: 2.686

4.  POPTREE2: Software for constructing population trees from allele frequency data and computing other population statistics with Windows interface.

Authors:  Naoko Takezaki; Masatoshi Nei; Koichiro Tamura
Journal:  Mol Biol Evol       Date:  2009-12-18       Impact factor: 16.240

5.  Genetic polymorphism study on 12 X STR loci of investigator Argus X STR kit in Bhil tribal population of Madhya Pradesh, India.

Authors:  Pankaj Shrivastava; Toshi Jain; Umang Gupta; Veena Ben Trivedi
Journal:  Leg Med (Tokyo)       Date:  2014-11-28       Impact factor: 1.376

6.  Gene and haplotype diversity of 23 Y-chromosomal short tandem repeat loci in the central Thai population.

Authors:  Kornkiat Vongpaisarnsin; Pattarakorn Saengkaeotrakul; Achara Boonlert; Nat Tansrisawad
Journal:  Forensic Sci Int Genet       Date:  2014-10-29       Impact factor: 4.882

7.  Ancestry informative markers for distinguishing between Thai populations based on genome-wide association datasets.

Authors:  Kornkiat Vongpaisarnsin; Jennifer Beth Listman; Robert T Malison; Joel Gelernter
Journal:  Leg Med (Tokyo)       Date:  2015-02-25       Impact factor: 1.376

8.  Accuracy of estimated phylogenetic trees from molecular data. II. Gene frequency data.

Authors:  M Nei; F Tajima; Y Tateno
Journal:  J Mol Evol       Date:  1983       Impact factor: 2.395

9.  Genetic analysis of twelve X-chromosomal STRs in Japanese and Chinese populations.

Authors:  Seisaku Uchigasaki; Jian Tie; Daisuke Takahashi
Journal:  Mol Biol Rep       Date:  2012-12-30       Impact factor: 2.316

10.  Development of two multiplex PCR systems for the analysis of 12 X-chromosomal STR loci in a northwestern Italian population sample.

Authors:  C Robino; A Giolitti; S Gino; C Torre
Journal:  Int J Legal Med       Date:  2006-07-22       Impact factor: 2.686

  10 in total

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