Literature DB >> 27038173

Dynamic Assessment of Functional Lipidomic Analysis in Human Urine.

Hannah E Rockwell1, Fei Gao1, Emily Y Chen1, Justice McDaniel1, Rangaprasad Sarangarajan1, Niven R Narain1, Michael A Kiebish2.   

Abstract

The development of enabling mass spectrometry platforms for the quantification of diverse lipid species in human urine is of paramount importance for understanding metabolic homeostasis in normal and pathophysiological conditions. Urine represents a non-invasive biofluid that can capture distinct differences in an individual's physiological status. However, currently there is a lack of quantitative workflows to engage in high throughput lipidomic analysis. This study describes the development of a MS/MS(ALL) shotgun lipidomic workflow and a micro liquid chromatography-high resolution tandem mass spectrometry (LC-MS/MS) workflow for urine structural and mediator lipid analysis, respectively. This workflow was deployed to understand biofluid sample handling and collection, extraction efficiency, and natural human variation over time. Utilization of 0.5 mL of urine for structural lipidomic analysis resulted in reproducible quantification of more than 600 lipid molecular species from over 20 lipid classes. Analysis of 1 mL of urine routinely quantified in excess of 55 mediator lipid metabolites comprised of octadecanoids, eicosanoids, and docosanoids generated by lipoxygenase, cyclooxygenase, and cytochrome P450 activities. In summary, the high-throughput functional lipidomics workflow described in this study demonstrates an impressive robustness and reproducibility that can be utilized for population health and precision medicine applications.

Entities:  

Keywords:  Lipid analysis; Lipid metabolism; Mass spectrometry; Molecular species; Phospholipid analysis; Second messengers

Mesh:

Substances:

Year:  2016        PMID: 27038173     DOI: 10.1007/s11745-016-4142-0

Source DB:  PubMed          Journal:  Lipids        ISSN: 0024-4201            Impact factor:   1.880


  33 in total

Review 1.  Shotgun lipidomics: electrospray ionization mass spectrometric analysis and quantitation of cellular lipidomes directly from crude extracts of biological samples.

Authors:  Xianlin Han; Richard W Gross
Journal:  Mass Spectrom Rev       Date:  2005 May-Jun       Impact factor: 10.946

Review 2.  Discovery of urinary biomarkers.

Authors:  Trairak Pisitkun; Rose Johnstone; Mark A Knepper
Journal:  Mol Cell Proteomics       Date:  2006-07-12       Impact factor: 5.911

Review 3.  Metabolomics: a global biochemical approach to drug response and disease.

Authors:  Rima Kaddurah-Daouk; Bruce S Kristal; Richard M Weinshilboum
Journal:  Annu Rev Pharmacol Toxicol       Date:  2008       Impact factor: 13.820

Review 4.  Proteomics by mass spectrometry: approaches, advances, and applications.

Authors:  John R Yates; Cristian I Ruse; Aleksey Nakorchevsky
Journal:  Annu Rev Biomed Eng       Date:  2009       Impact factor: 9.590

5.  Factors influencing the electrospray intrasource separation and selective ionization of glycerophospholipids.

Authors:  Xianlin Han; Kui Yang; Jingyue Yang; Kora N Fikes; Hua Cheng; Richard W Gross
Journal:  J Am Soc Mass Spectrom       Date:  2006-01-18       Impact factor: 3.109

Review 6.  Protein analysis by shotgun/bottom-up proteomics.

Authors:  Yaoyang Zhang; Bryan R Fonslow; Bing Shan; Moon-Chang Baek; John R Yates
Journal:  Chem Rev       Date:  2013-02-26       Impact factor: 60.622

7.  Urine biomarkers predict the cause of glomerular disease.

Authors:  Sanju A Varghese; T Brian Powell; Milos N Budisavljevic; Jim C Oates; John R Raymond; Jonas S Almeida; John M Arthur
Journal:  J Am Soc Nephrol       Date:  2007-02-14       Impact factor: 10.121

8.  Global analysis of the yeast lipidome by quantitative shotgun mass spectrometry.

Authors:  Christer S Ejsing; Julio L Sampaio; Vineeth Surendranath; Eva Duchoslav; Kim Ekroos; Robin W Klemm; Kai Simons; Andrej Shevchenko
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-27       Impact factor: 11.205

9.  Shotgun Lipidomics by Sequential Precursor Ion Fragmentation on a Hybrid Quadrupole Time-of-Flight Mass Spectrometer.

Authors:  Brigitte Simons; Dimple Kauhanen; Tuulia Sylvänne; Kirill Tarasov; Eva Duchoslav; Kim Ekroos
Journal:  Metabolites       Date:  2012-02-20

10.  Risk of death in heart disease is associated with elevated urinary globotriaosylceramide.

Authors:  Raphael Schiffmann; Sabrina Forni; Caren Swift; Nastry Brignol; Xiaoyang Wu; David J Lockhart; Derek Blankenship; Xuan Wang; Paul A Grayburn; Matthew R G Taylor; Brian D Lowes; Maria Fuller; Elfrida R Benjamin; Lawrence Sweetman
Journal:  J Am Heart Assoc       Date:  2014-02-04       Impact factor: 5.501

View more
  9 in total

1.  Targeted quantification of lipid mediators in skeletal muscles using restricted access media-based trap-and-elute liquid chromatography-mass spectrometry.

Authors:  Zhiying Wang; Liangqiao Bian; Chenglin Mo; Maciej Kukula; Kevin A Schug; Marco Brotto
Journal:  Anal Chim Acta       Date:  2017-07-14       Impact factor: 6.558

2.  Quantitative metabolic profiling of urinary eicosanoids for clinical phenotyping.

Authors:  Cristina Gómez; Carolina Gonzalez-Riano; Coral Barbas; Johan Kolmert; Min Hyung Ryu; Christopher Carlsten; Sven-Erik Dahlén; Craig E Wheelock
Journal:  J Lipid Res       Date:  2019-03-06       Impact factor: 5.922

3.  Cold-Activated Lipid Dynamics in Adipose Tissue Highlights a Role for Cardiolipin in Thermogenic Metabolism.

Authors:  Matthew D Lynes; Farnaz Shamsi; Elahu Gosney Sustarsic; Luiz O Leiria; Chih-Hao Wang; Sheng-Chiang Su; Tian Lian Huang; Fei Gao; Niven R Narain; Emily Y Chen; Aaron M Cypess; Tim J Schulz; Zachary Gerhart-Hines; Michael A Kiebish; Yu-Hua Tseng
Journal:  Cell Rep       Date:  2018-07-17       Impact factor: 9.423

4.  Urinary Lipidomics: evidence for multiple sources and sexual dimorphism in healthy individuals.

Authors:  J Graessler; C S Mehnert; K-M Schulte; S Bergmann; S Strauss; T D Bornstein; J Licinio; M-L Wong; A L Birkenfeld; S R Bornstein
Journal:  Pharmacogenomics J       Date:  2017-06-13       Impact factor: 3.550

Review 5.  A narrative review of urinary phospholipids: from biochemical aspect towards clinical application.

Authors:  Xin Li; Kenji Nakayama; Takayuki Goto; Shusuke Akamatsu; Takashi Kobayashi; Koji Shimizu; Osamu Ogawa; Takahiro Inoue
Journal:  Transl Androl Urol       Date:  2021-04

Review 6.  Biofluid lipidome: a source for potential diagnostic biomarkers.

Authors:  Arkasubhra Ghosh; Krishnatej Nishtala
Journal:  Clin Transl Med       Date:  2017-06-20

7.  Repeated administration of the NSAID meloxicam alters the plasma and urine lipidome.

Authors:  Sol M Rivera-Velez; Liam E Broughton-Neiswanger; Martin Suarez; Pablo Piñeyro; Jinna Navas; Sandy Chen; Julianne Hwang; Nicolas F Villarino
Journal:  Sci Rep       Date:  2019-03-13       Impact factor: 4.379

8.  Monoacylglycerol Analysis Using MS/MS(ALL) Quadruple Time of Flight Mass Spectrometry.

Authors:  Fei Gao; Justice McDaniel; Emily Y Chen; Hannah Rockwell; Matthew D Lynes; Yu-Hua Tseng; Rangaprasad Sarangarajan; Niven R Narain; Michael A Kiebish
Journal:  Metabolites       Date:  2016-08-17

9.  Chronic stress and antidepressant treatment alter purine metabolism and beta oxidation within mouse brain and serum.

Authors:  Peter J Hamilton; Emily Y Chen; Vladimir Tolstikov; Catherine J Peña; Joseph A Picone; Punit Shah; Kiki Panagopoulos; Ana N Strat; Deena M Walker; Zachary S Lorsch; Hannah L Robinson; Nicholas L Mervosh; Drew D Kiraly; Rangaprasad Sarangarajan; Niven R Narain; Michael A Kiebish; Eric J Nestler
Journal:  Sci Rep       Date:  2020-10-22       Impact factor: 4.379

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.