Literature DB >> 27027586

Cancer: hunting rare somatic mutations.

Vivien Marx.   

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Year:  2016        PMID： 27027586     DOI： 10.1038/nmeth.3803

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  9 in total

1.  Sequence analysis of mutations and translocations across breast cancer subtypes.

Authors:  Shantanu Banerji; Kristian Cibulskis; Claudia Rangel-Escareno; Kristin K Brown; Scott L Carter; Abbie M Frederick; Michael S Lawrence; Andrey Y Sivachenko; Carrie Sougnez; Lihua Zou; Maria L Cortes; Juan C Fernandez-Lopez; Shouyong Peng; Kristin G Ardlie; Daniel Auclair; Veronica Bautista-Piña; Fujiko Duke; Joshua Francis; Joonil Jung; Antonio Maffuz-Aziz; Robert C Onofrio; Melissa Parkin; Nam H Pho; Valeria Quintanar-Jurado; Alex H Ramos; Rosa Rebollar-Vega; Sergio Rodriguez-Cuevas; Sandra L Romero-Cordoba; Steven E Schumacher; Nicolas Stransky; Kristin M Thompson; Laura Uribe-Figueroa; Jose Baselga; Rameen Beroukhim; Kornelia Polyak; Dennis C Sgroi; Andrea L Richardson; Gerardo Jimenez-Sanchez; Eric S Lander; Stacey B Gabriel; Levi A Garraway; Todd R Golub; Jorge Melendez-Zajgla; Alex Toker; Gad Getz; Alfredo Hidalgo-Miranda; Matthew Meyerson
Journal:  Nature       Date:  2012-06-20       Impact factor: 49.962

2.  Detection and quantification of rare mutations with massively parallel sequencing.

Authors:  Isaac Kinde; Jian Wu; Nick Papadopoulos; Kenneth W Kinzler; Bert Vogelstein
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-17       Impact factor: 11.205

3.  Sequencing small genomic targets with high efficiency and extreme accuracy.

Authors:  Michael W Schmitt; Edward J Fox; Marc J Prindle; Kate S Reid-Bayliss; Lawrence D True; Jerald P Radich; Lawrence A Loeb
Journal:  Nat Methods       Date:  2015-04-06       Impact factor: 28.547

4.  MAGI3-AKT3 fusion in breast cancer amended.

Authors:  Juan-Miguel Mosquera; Sonal Varma; Chantal Pauli; Theresa Y MacDonald; Jossie J Yashinskie; Zsuzsanna Varga; Andrea Sboner; Holger Moch; Mark A Rubin; Sandra J Shin
Journal:  Nature       Date:  2015-04-16       Impact factor: 49.962

5.  Pugh et al. reply.

Authors:  Trevor J Pugh; Shantanu Banerji; Matthew Meyerson
Journal:  Nature       Date:  2015-04-16       Impact factor: 49.962

6.  Detection of ultra-rare mutations by next-generation sequencing.

Authors:  Michael W Schmitt; Scott R Kennedy; Jesse J Salk; Edward J Fox; Joseph B Hiatt; Lawrence A Loeb
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-01       Impact factor: 11.205

7.  CREST maps somatic structural variation in cancer genomes with base-pair resolution.

Authors:  Jianmin Wang; Charles G Mullighan; John Easton; Stefan Roberts; Sue L Heatley; Jing Ma; Michael C Rusch; Ken Chen; Christopher C Harris; Li Ding; Linda Holmfeldt; Debbie Payne-Turner; Xian Fan; Lei Wei; David Zhao; John C Obenauer; Clayton Naeve; Elaine R Mardis; Richard K Wilson; James R Downing; Jinghui Zhang
Journal:  Nat Methods       Date:  2011-06-12       Impact factor: 28.547

8.  TP53 intron 1 hotspot rearrangements are specific to sporadic osteosarcoma and can cause Li-Fraumeni syndrome.

Authors:  Sebastian Ribi; Daniel Baumhoer; Kristy Lee; Audrey S M Teo; Babita Madan; Kang Zhang; Wendy K Kohlmann; Fei Yao; Wah Heng Lee; Qiangze Hoi; Shaojiang Cai; Xing Yi Woo; Patrick Tan; Gernot Jundt; Jan Smida; Michaela Nathrath; Wing-Kin Sung; Joshua D Schiffman; David M Virshup; Axel M Hillmer
Journal:  Oncotarget       Date:  2015-04-10

9.  Targeted single molecule mutation detection with massively parallel sequencing.

Authors:  Mark T Gregory; Jessica A Bertout; Nolan G Ericson; Sean D Taylor; Rithun Mukherjee; Harlan S Robins; Charles W Drescher; Jason H Bielas
Journal:  Nucleic Acids Res       Date:  2015-09-17       Impact factor: 16.971
  9 in total
  4 in total

Review 1.  Molecular Profiling of Liquid Biopsy Samples for Precision Medicine.

Authors:  Camila D M Campos; Joshua M Jackson; Małgorzata A Witek; Steven A Soper
Journal:  Cancer J       Date:  2018 Mar/Apr       Impact factor: 3.360

2.  Targeted error-suppressed quantification of circulating tumor DNA using semi-degenerate barcoded adapters and biotinylated baits.

Authors:  Miguel Alcaide; Stephen Yu; Jordan Davidson; Marco Albuquerque; Kevin Bushell; Daniel Fornika; Sarah Arthur; Bruno M Grande; Suzan McNamara; Mathilde Couetoux du Tertre; Gerald Batist; David G Huntsman; Luca Cavallone; Adriana Aguilar; Mark Basik; Nathalie A Johnson; Rebecca J Deyell; S Rod Rassekh; Ryan D Morin
Journal:  Sci Rep       Date:  2017-09-05       Impact factor: 4.379

3.  OutLyzer: software for extracting low-allele-frequency tumor mutations from sequencing background noise in clinical practice.

Authors:  Etienne Muller; Nicolas Goardon; Baptiste Brault; Antoine Rousselin; Germain Paimparay; Angelina Legros; Robin Fouillet; Olivia Bruet; Aurore Tranchant; Florian Domin; Chankannira San; Céline Quesnelle; Thierry Frebourg; Agathe Ricou; Sophie Krieger; Dominique Vaur; Laurent Castera
Journal:  Oncotarget       Date:  2016-11-29

4.  Rare, functional, somatic variants in gene families linked to cancer genes: GPCR signaling as a paradigm.

Authors:  Francesco Raimondi; Asuka Inoue; Francois M N Kadji; Ni Shuai; Juan-Carlos Gonzalez; Gurdeep Singh; Alicia Alonso de la Vega; Rocio Sotillo; Bernd Fischer; Junken Aoki; J Silvio Gutkind; Robert B Russell
Journal:  Oncogene       Date:  2019-07-23       Impact factor: 9.867
  4 in total

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