Literature DB >> 27022702

Design of Catalytic Peptides and Proteins Through Rational and Combinatorial Approaches.

Yoshiaki Maeda1,2, Olga V Makhlynets3, Hiroshi Matsui1,4, Ivan V Korendovych3.   

Abstract

This review focuses on recent progress in noncomputational methods to introduce catalytic function into proteins, peptides, and peptide assemblies. We discuss various approaches to creating catalytic activity and classification of noncomputational methods into rational and combinatorial classes. The section on rational design covers recent progress in the development of short peptides and oligomeric peptide assemblies for various natural and unnatural reactions. The section on combinatorial design describes recent advances in the discovery of catalytic peptides. We present the future prospects of these and other new approaches in a broader context, including implications for functional material design.

Entities:  

Keywords:  catalysis; metalloenzymes; phage display; protein design; supramolecular assemblies

Mesh:

Substances:

Year:  2016        PMID: 27022702      PMCID: PMC6345664          DOI: 10.1146/annurev-bioeng-111215-024421

Source DB:  PubMed          Journal:  Annu Rev Biomed Eng        ISSN: 1523-9829            Impact factor:   9.590


  10 in total

1.  Copper-Containing Catalytic Amyloids Promote Phosphoester Hydrolysis and Tandem Reactions.

Authors:  Zsófia Lengyel; Caroline M Rufo; Yurii S Moroz; Olga V Makhlynets; Ivan V Korendovych
Journal:  ACS Catal       Date:  2017-11-22       Impact factor: 13.084

2.  Insights Into How Heme Reduction Potentials Modulate Enzymatic Activities of a Myoglobin-based Functional Oxidase.

Authors:  Ambika Bhagi-Damodaran; Maximilian Kahle; Yelu Shi; Yong Zhang; Pia Ädelroth; Yi Lu
Journal:  Angew Chem Int Ed Engl       Date:  2017-05-04       Impact factor: 15.336

3.  Rational screening of biomineralisation peptides for colour-selected one-pot gold nanoparticle syntheses.

Authors:  M Tanaka; Y Takahashi; L Roach; K Critchley; S D Evans; M Okochi
Journal:  Nanoscale Adv       Date:  2018-08-20

4.  A Designed Enzyme Promotes Selective Post-translational Acylation.

Authors:  Pallavi M Gosavi; Megha Jayachandran; Joel J L Rempillo; Oleksii Zozulia; Olga V Makhlynets; Ivan V Korendovych
Journal:  Chembiochem       Date:  2018-06-21       Impact factor: 3.164

5.  Manganese and Cobalt in the Nonheme-Metal-Binding Site of a Biosynthetic Model of Heme-Copper Oxidase Superfamily Confer Oxidase Activity through Redox-Inactive Mechanism.

Authors:  Julian H Reed; Yelu Shi; Qianhong Zhu; Saumen Chakraborty; Evan N Mirts; Igor D Petrik; Ambika Bhagi-Damodaran; Matthew Ross; Pierre Moënne-Loccoz; Yong Zhang; Yi Lu
Journal:  J Am Chem Soc       Date:  2017-08-25       Impact factor: 15.419

6.  Biocatalysts Based on Peptide and Peptide Conjugate Nanostructures.

Authors:  Ian W Hamley
Journal:  Biomacromolecules       Date:  2021-04-12       Impact factor: 6.988

7.  Machine Learning Identifies Chemical Characteristics That Promote Enzyme Catalysis.

Authors:  Brian M Bonk; James W Weis; Bruce Tidor
Journal:  J Am Chem Soc       Date:  2019-02-21       Impact factor: 15.419

8.  Tripeptide Self-Assembly into Bioactive Hydrogels: Effects of Terminus Modification on Biocatalysis.

Authors:  Marina Kurbasic; Ana M Garcia; Simone Viada; Silvia Marchesan
Journal:  Molecules       Date:  2020-12-31       Impact factor: 4.411

Review 9.  Antifungal Agents in Agriculture: Friends and Foes of Public Health.

Authors:  Veronica Soares Brauer; Caroline Patini Rezende; Andre Moreira Pessoni; Renato Graciano De Paula; Kanchugarakoppal S Rangappa; Siddaiah Chandra Nayaka; Vijai Kumar Gupta; Fausto Almeida
Journal:  Biomolecules       Date:  2019-09-23

10.  Array-Based Screening of Silver Nanoparticle Mineralization Peptides.

Authors:  Masayoshi Tanaka; Shogo Saito; Reo Kita; Jaehee Jang; Yonghyun Choi; Jonghoon Choi; Mina Okochi
Journal:  Int J Mol Sci       Date:  2020-03-30       Impact factor: 5.923

  10 in total

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