| Literature DB >> 27007907 |
Geraldo Mäder1, Luana Castro1, Sandro Luis Bonatto2, Loreta Brandão de Freitas1.
Abstract
Non-indigenous plants exhibit different attributes that make them aggressive competitors with indigenous plants and serious threats to biodiversity.Senecio madagascariensis (fireweed, Asteraceae), a native from southern Africa, is a strong competitor in agricultural activities and has toxic alkaloids that may result in high cattle mortality. In Brazil, this weed was collected for the first time in 1995 and has since spread quickly throughout the Pampas region. To better understand the invasion of the fireweed in South America, we used a genetic characterization with internal transcribed spacer (ITS) and microsatellite markers. Based on the ITS data, the southern Brazil populations of S. madagascariensis shared genetic homology with samples taken from the Hawaiian Islands and South Africa. Microsatellite analysis showed the genetic diversity split in two clusters, perhaps intimating the independent introduction of each species into South America. Although fireweed was introduced recently in southern Brazil, the considerable levels of genetic diversity, gene flow, and inbreeding may indicate success in the species establishment in this environment.Entities:
Year: 2016 PMID: 27007907 PMCID: PMC4807391 DOI: 10.1590/1678-4685-GMB-2015-0167
Source DB: PubMed Journal: Genet Mol Biol ISSN: 1415-4757 Impact factor: 1.771
Genetic diversity and collection sites information for the Senecio madagascariensis populations sampled
| Local information | ITS | Microsatellite diversity | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Population |
|
| Collection site | Geographical coordinates | Voucher | Sequence types | A |
| Ho | He |
|
|
| URU | 04 | 04 | URU, Ciudad Del Plata | 34°45' 53″S/56°24' 25'W | 166599 | S3;S4 | 3.00 | 2.71 | 0.412 | 0.577 | 0.316 | 2 |
| POA | 10 | 21 | BRA, Porto Alegre | 30°04' 01″S/51°07' 14″W | 166600 | S1–2; S6; S11–12 | 7.50 | 3.67 | 0.454 | 0.763 | 0.411 | 2 |
| NSR | 11 | 22 | BRA, Nova Santa Rita | 29°50' 45″S/51°16' 38″W | 166601 | S1–2; S6; S13; S17 | 8.13 | 3.48 | 0.377 | 0.731 | 0.490 | 7 |
| RIG | 18 | 24 | BRA, Rio Grande, Povo Novo | 31°56' 31″S/52°18' 39″W | 166604 | S1–2 | 5.88 | 2.94 | 0.352 | 0.652 | 0.465 | 3 |
| VIA | 13 | 21 | BRA, Viamão | 30°08' 15″S/50°52' 05″W | 166605 | S1–2 | 6.75 | 3.28 | 0.452 | 0.698 | 0.358 | 3 |
| CPS | 13 | 22 | BRA, Capivari do Sul | 30°08' 51'S/50°30' 31″W | 166606 | S1–2; S18 | 8.13 | 3.62 | 0.467 | 0.738 | 0.374 | 4 |
| GLO | 10 | 14 | BRA, Glorinha | 29°53' 25″S/50°42' 08″W | 166607 | S1–2 | 6.38 | 3.59 | 0.402 | 0.759 | 0.479 | 0 |
| OSO | 06 | 17 | BRA, Osório | 29°45' 05″S/50°12' 47″W | 166608 | S1–2; S19 | 6.13 | 3.31 | 0.477 | 0.710 | 0.337 | 1 |
| TOR | 08 | 26 | BRA, Torres | 29°18' 17″S/49°46' 21″W | 169679 | S1–2; S10 | 8.00 | 3.58 | 0.548 | 0.756 | 0.279 | 2 |
| PLS | 08 | 12 | BRA, Palmares do Sul | 30°25' 37″S/50°30' 04″W | 169680 | S1–2; S20 | 4.00 | 2.73 | 0.584 | 0.626 | 0.071 | 1 |
| BAG | 07 | 33 | BRA, Bagé | 31°17' 57″S/54°04' 46″W | 170944 | S1;S14 | 8.25 | 3.45 | 0.534 | 0.711 | 0.252 | 5 |
| ELS | 10 | 22 | BRA, Eldorado do Sul | 30°03'58″S/51°33' 27″W | 166602 | S1–2; S6; S7 | 7.50 | 3.34 | 0.597 | 0.722 | 0.177 | 6 |
| BAR | 11 | 21 | BRA, Barra do Ribeiro | 30°25' 22″S/51°28' 03″W | 166603 | S1–2; S9 | 8.13 | 3.67 | 0.451 | 0.764 | 0.417 | 2 |
| MIL | 04 | 18 | BRA, Minas do Leão | 30°08' 59″S/52°04' 18″W | 170943 | S1–2; S8 | 8.50 | 3.85 | 0.551 | 0.771 | 0.292 | 7 |
| CHS | 06 | 30 | BRA, Cachoeira do Sul | 30°16' 30″S/52°56' 13″W | 166946 | S1-2; S16 | 9.13 | 3.61 | 0.529 | 0.747 | 0.295 | 10 |
| Total | 139 | 307 | Average | 7.03 | 3.39 | 0.479 | 0.715 | 0.334 | ||||
Sample size (n 1 = ITS data;n 2 = SSR data); number of alleles per population (A); allelic richness (A); average observed heterozygosity across loci (He); expected heterozygosity (Ho) and fixation index (F); private alleles (P).
ICN Herbarium, Department of Botany, Biosciences Institute, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brazil.
Sequence types of samples outside of South América: South África S1; Hawaii S2; Swaziland S21; Madagascar S22-26.
Figure 1Collection sites. a) Map of South America highlighting the Brazilian state of Rio Grande do Sul and Uruguay. b) Colored dots indicate all collected populations of Senecio madagascariensis Poir. included in this study. The different shapes correspond to the clusters by STRUCTURE based on SSR data (rectangles; bars represent the membership coefficients (Q); K = 2) and NJ dendrogram/network (circles).
Diversity and neutrality indices in Senecio madagascariensis based on ITS data
| Parameter | South America | Complete data set |
|---|---|---|
| Sample size | 139 | 161 |
| No. sequence types | 20 | 26 |
|
| 0.001 (0.001) | 0.002 (0.002) |
| Genetic diversity (SD) | 0.624 0.02 | 0.763 (0.017) |
|
| 0.146 ( | 0.312 ( |
South America samples plus sequences from South Africa (7); Swaziland (2);
Madagascar (8) and Hawaiian Islands (5).
π = Nucleotide diversity.
SD= Standard deviation.
Figure 2The evolutionary relationships of Senecio madagascariensis Poir. based on ITS sequence types obtained by median-joining network approach. Gray scale shading identify the geographic origin. Circle sizes are proportional to haplotype frequency. Crossed lines represent substitutions inferred in the branches.
Figure 3The unrooted Neighbor-Joining dendrogram based on the proportion of shared allele distances obtained by SSR genotypes. The branch colors indicate the two groups inferred by the STRUCTURE software. Black: Central group. Gray: Coastal group. *First-generation migrants among groups by estimates of dispersal in GeneClass2.
Statistical comparison of allelic richness (A), unbiased gene diversity (H), observed heterozygosity (H), inbreeding coefficient (F) and levels of differentiation among populations (F) for the two genetic groups of Senecio madagascariensis
| n | AR | Hs | Ho | FIS
| FST
| |
|---|---|---|---|---|---|---|
| Coastal group | 216 | 3.305 | 0.739 | 0.460 | 0.348 | 0.073 |
| Central group | 91 | 3.616 | 0.794 | 0.532 | 0.295 | 0.103 |
P <0.05.
n = sample size.