Literature DB >> 27006095

Oxime conjugation in protein chemistry: from carbonyl incorporation to nucleophilic catalysis.

Stijn M Agten1, Philip E Dawson2, Tilman M Hackeng1.   

Abstract

Use of oxime forming reactions has become a widely applied strategy for peptide and protein bioconjugation. The efficiency of the reaction and robust stability of the oxime product has led to the development of a growing list of methods to introduce the required ketone or aldehyde functionality site specifically into proteins. Early methods focused on site-specific oxidation of an N-terminal serine or threonine and more recently transamination methods have been developed to convert a broader set of N-terminal amino acids into a ketone or aldehyde. More recently, site-specific modification of protein has been attained through engineering enzymes involved in posttranslational modifications in order to accommodate aldehyde-containing substrates. Similarly, a growing list of unnatural amino acids can be introduced through development of selective amino-acyl tRNA synthetase/tRNA pairs combined with codon reassignment. In the case of glycoproteins, glycans can be selectively modified chemically or enzymatically to introduce aldehyde functional groups. Finally, the total chemical synthesis of proteins complements these biological and chemoenzymatic approaches. Once introduced, the oxime ligation of these aldehyde and ketone groups can be catalyzed by aniline or a variety of aniline derivatives to tune the activity, pH preference, stability and solubility of the catalyst.
Copyright © 2016 European Peptide Society and John Wiley & Sons, Ltd. Copyright © 2016 European Peptide Society and John Wiley & Sons, Ltd.

Entities:  

Keywords:  aldehyde; aniline; carbonyl; ketone; nucleophilic catalysis; oxime

Mesh:

Substances:

Year:  2016        PMID: 27006095     DOI: 10.1002/psc.2874

Source DB:  PubMed          Journal:  J Pept Sci        ISSN: 1075-2617            Impact factor:   1.905


  13 in total

1.  Borylated oximes: versatile building blocks for organic synthesis.

Authors:  Sean K Liew; Aleksandra Holownia; Diego B Diaz; Philip A Cistrone; Philip E Dawson; Andrei K Yudin
Journal:  Chem Commun (Camb)       Date:  2017-09-29       Impact factor: 6.222

Review 2.  Oximes and Hydrazones in Bioconjugation: Mechanism and Catalysis.

Authors:  Dominik K Kölmel; Eric T Kool
Journal:  Chem Rev       Date:  2017-06-22       Impact factor: 60.622

3.  β-Hydroxy-Stabilized Boron-Nitrogen Heterocycles Enable Rapid and Efficient C-Terminal Protein Modification.

Authors:  Han Gu; Saptarshi Ghosh; Richard J Staples; Susan L Bane
Journal:  Bioconjug Chem       Date:  2019-09-18       Impact factor: 4.774

4.  Chemoenzymatic o-Quinone Methide Formation.

Authors:  Tyler J Doyon; Jonathan C Perkins; Summer A Baker Dockrey; Evan O Romero; Kevin C Skinner; Paul M Zimmerman; Alison R H Narayan
Journal:  J Am Chem Soc       Date:  2019-12-16       Impact factor: 15.419

Review 5.  Recent developments on oximes to improve the blood brain barrier penetration for the treatment of organophosphorus poisoning: a review.

Authors:  Mohd Nor Faiz Norrrahim; Mas Amira Idayu Abdul Razak; Noor Aisyah Ahmad Shah; Herdawati Kasim; Wan Yusmawati Wan Yusoff; Norhana Abdul Halim; Siti Aminah Mohd Nor; Siti Hasnawati Jamal; Keat Khim Ong; Wan Md Zin Wan Yunus; Victor Feizal Knight; Noor Azilah Mohd Kasim
Journal:  RSC Adv       Date:  2020-01-27       Impact factor: 4.036

Review 6.  The emerging landscape of single-molecule protein sequencing technologies.

Authors:  Javier Antonio Alfaro; Peggy Bohländer; Mingjie Dai; Mike Filius; Cecil J Howard; Xander F van Kooten; Shilo Ohayon; Adam Pomorski; Sonja Schmid; Amit Meller; Chirlmin Joo; Aleksei Aksimentiev; Eric V Anslyn; Georges Bedran; Chan Cao; Mauro Chinappi; Etienne Coyaud; Cees Dekker; Gunnar Dittmar; Nicholas Drachman; Rienk Eelkema; David Goodlett; Sébastien Hentz; Umesh Kalathiya; Neil L Kelleher; Ryan T Kelly; Zvi Kelman; Sung Hyun Kim; Bernhard Kuster; David Rodriguez-Larrea; Stuart Lindsay; Giovanni Maglia; Edward M Marcotte; John P Marino; Christophe Masselon; Michael Mayer; Patroklos Samaras; Kumar Sarthak; Lusia Sepiashvili; Derek Stein; Meni Wanunu; Mathias Wilhelm; Peng Yin
Journal:  Nat Methods       Date:  2021-06-07       Impact factor: 47.990

7.  Gelatin-Based Hydrogels through Homobifunctional Triazolinediones Targeting Tyrosine Residues.

Authors:  Roberto Guizzardi; Luca Vaghi; Marcello Marelli; Antonino Natalello; Ivan Andreosso; Antonio Papagni; Laura Cipolla
Journal:  Molecules       Date:  2019-02-07       Impact factor: 4.411

8.  One-pot oxime ligation from peptides bearing thiazolidine and aminooxyacetyl groups.

Authors:  Stéphane Duflocq; Jingjing Zhou; Florent Huguenot; Michel Vidal; Wang-Qing Liu
Journal:  RSC Adv       Date:  2020-05-06       Impact factor: 4.036

9.  Advancing the Frontiers of Chemical Protein Synthesis-The 7th CPS Meeting, Haifa, Israel.

Authors:  Anne C Conibear; Markus Muttenthaler
Journal:  Cell Chem Biol       Date:  2018-03-15       Impact factor: 8.116

10.  Saline Accelerates Oxime Reaction with Aldehyde and Keto Substrates at Physiological pH.

Authors:  Shujiang Wang; Ganesh N Nawale; Sandeep Kadekar; Oommen P Oommen; Naresh K Jena; Sudip Chakraborty; Jöns Hilborn; Oommen P Varghese
Journal:  Sci Rep       Date:  2018-02-01       Impact factor: 4.379

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