Literature DB >> 27002638

Establishment and Maintenance of Primary Fibroblast Repositories for Rare Diseases-Friedreich's Ataxia Example.

Yanjie Li1, Urszula Polak2, Amanda D Clark1, Angela D Bhalla1, Yu-Yun Chen1, Jixue Li1, Jennifer Farmer3, Lauren Seyer3, David Lynch3, Jill S Butler1, Marek Napierala1,4.   

Abstract

Friedreich's ataxia (FRDA) represents a rare neurodegenerative disease caused by expansion of GAA trinucleotide repeats in the first intron of the FXN gene. The number of GAA repeats in FRDA patients varies from approximately 60 to <1000 and is tightly correlated with age of onset and severity of the disease symptoms. The heterogeneity of Friedreich's ataxia stresses the need for a large cohort of patient samples to conduct studies addressing the mechanism of disease pathogenesis or evaluate novel therapeutic candidates. Herein, we report the establishment and characterization of an FRDA fibroblast repository, which currently includes 50 primary cell lines derived from FRDA patients and seven lines from mutation carriers. These cells are also a source for generating induced pluripotent stem cell (iPSC) lines by reprogramming, as well as disease-relevant neuronal, cardiac, and pancreatic cells that can then be differentiated from the iPSCs. All FRDA and carrier lines are derived using a standard operating procedure and characterized to confirm mutation status, as well as expression of FXN mRNA and protein. Consideration and significance of creating disease-focused cell line and tissue repositories, especially in the context of rare and heterogeneous disorders, are presented. Although the economic aspect of creating and maintaining such repositories is important, the benefits of easy access to a collection of well-characterized cell lines for the purpose of drug discovery or disease mechanism studies overshadow the associated costs. Importantly, all FRDA fibroblast cell lines collected in our repository are available to the scientific community.

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Year:  2016        PMID: 27002638      PMCID: PMC4991587          DOI: 10.1089/bio.2015.0117

Source DB:  PubMed          Journal:  Biopreserv Biobank        ISSN: 1947-5543            Impact factor:   2.300


  21 in total

Review 1.  The molecular basis of Friedreich ataxia.

Authors:  Massimo Pandolfo
Journal:  Adv Exp Med Biol       Date:  2002       Impact factor: 2.622

2.  Friedreich's ataxia induced pluripotent stem cells model intergenerational GAA⋅TTC triplet repeat instability.

Authors:  Sherman Ku; Elisabetta Soragni; Erica Campau; Elizabeth A Thomas; Gulsah Altun; Louise C Laurent; Jeanne F Loring; Marek Napierala; Joel M Gottesfeld
Journal:  Cell Stem Cell       Date:  2010-11-05       Impact factor: 24.633

3.  Absence of cancer-associated changes in human fibroblasts immortalized with telomerase.

Authors:  C P Morales; S E Holt; M Ouellette; K J Kaur; Y Yan; K S Wilson; M A White; W E Wright; J W Shay
Journal:  Nat Genet       Date:  1999-01       Impact factor: 38.330

4.  Common data elements for clinical research in Friedreich's ataxia.

Authors:  David R Lynch; Massimo Pandolfo; Jorg B Schulz; Susan Perlman; Martin B Delatycki; R Mark Payne; Robert Shaddy; Kenneth H Fischbeck; Jennifer Farmer; Paul Kantor; Subha V Raman; Lisa Hunegs; Joanne Odenkirchen; Kristy Miller; Petra Kaufmann
Journal:  Mov Disord       Date:  2012-12-12       Impact factor: 10.338

Review 5.  Expanded complexity of unstable repeat diseases.

Authors:  Urszula Polak; Elizabeth McIvor; Sharon Y R Dent; Robert D Wells; Marek Napierala
Journal:  Biofactors       Date:  2012-12-11       Impact factor: 6.113

6.  Excision of Expanded GAA Repeats Alleviates the Molecular Phenotype of Friedreich's Ataxia.

Authors:  Yanjie Li; Urszula Polak; Angela D Bhalla; Natalia Rozwadowska; Jill Sergesketter Butler; David R Lynch; Sharon Y R Dent; Marek Napierala
Journal:  Mol Ther       Date:  2015-03-11       Impact factor: 11.454

7.  Frataxin is essential for extramitochondrial Fe-S cluster proteins in mammalian tissues.

Authors:  Alain Martelli; Marie Wattenhofer-Donzé; Stéphane Schmucker; Samuel Bouvet; Laurence Reutenauer; Hélène Puccio
Journal:  Hum Mol Genet       Date:  2007-06-27       Impact factor: 6.150

Review 8.  Frataxin: a protein in search for a function.

Authors:  Annalisa Pastore; Helene Puccio
Journal:  J Neurochem       Date:  2013-08       Impact factor: 5.372

9.  Relation between trinucleotide GAA repeat length and sensory neuropathy in Friedreich's ataxia.

Authors:  L Santoro; G De Michele; A Perretti; C Crisci; S Cocozza; F Cavalcanti; M Ragno; A Monticelli; A Filla; G Caruso
Journal:  J Neurol Neurosurg Psychiatry       Date:  1999-01       Impact factor: 10.154

10.  Friedreich's ataxia: point mutations and clinical presentation of compound heterozygotes.

Authors:  M Cossée; A Dürr; M Schmitt; N Dahl; P Trouillas; P Allinson; M Kostrzewa; A Nivelon-Chevallier; K H Gustavson; A Kohlschütter; U Müller; J L Mandel; A Brice; M Koenig; F Cavalcanti; A Tammaro; G De Michele; A Filla; S Cocozza; M Labuda; L Montermini; J Poirier; M Pandolfo
Journal:  Ann Neurol       Date:  1999-02       Impact factor: 10.422

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  14 in total

1.  Comprehensive analysis of gene expression patterns in Friedreich's ataxia fibroblasts by RNA sequencing reveals altered levels of protein synthesis factors and solute carriers.

Authors:  Jill Sergesketter Napierala; Yanjie Li; Yue Lu; Kevin Lin; Lauren A Hauser; David R Lynch; Marek Napierala
Journal:  Dis Model Mech       Date:  2017-11-01       Impact factor: 5.758

2.  GAA•TTC repeat expansion in human cells is mediated by mismatch repair complex MutLγ and depends upon the endonuclease domain in MLH3 isoform one.

Authors:  Anasheh Halabi; Kayla T B Fuselier; Ed Grabczyk
Journal:  Nucleic Acids Res       Date:  2018-05-04       Impact factor: 16.971

3.  Impact of biobanks on research outcomes in rare diseases: a systematic review.

Authors:  Monique Garcia; Jenny Downs; Alyce Russell; Wei Wang
Journal:  Orphanet J Rare Dis       Date:  2018-11-12       Impact factor: 4.123

4.  Cellular and animal models of skin alterations in the autism-related ADNP syndrome.

Authors:  Pilar Mollinedo; Oxana Kapitansky; Domingo Gonzalez-Lamuño; Adi Zaslavsky; Pedro Real; Illana Gozes; Alberto Gandarillas; Jose L Fernandez-Luna
Journal:  Sci Rep       Date:  2019-01-24       Impact factor: 4.379

5.  Targeting NRF2 for the Treatment of Friedreich's Ataxia: A Comparison among Drugs.

Authors:  Sara Petrillo; Jessica D'Amico; Piergiorgio La Rosa; Enrico Silvio Bertini; Fiorella Piemonte
Journal:  Int J Mol Sci       Date:  2019-10-21       Impact factor: 5.923

6.  Alzheimer's disease mechanisms in peripheral cells: Promises and challenges.

Authors:  Eugenia Trushina
Journal:  Alzheimers Dement (N Y)       Date:  2019-10-23

7.  Deep sequencing of mitochondrial genomes reveals increased mutation load in Friedreich's ataxia.

Authors:  Angela D Bhalla; Alireza Khodadadi-Jamayran; Yanjie Li; David R Lynch; Marek Napierala
Journal:  Ann Clin Transl Neurol       Date:  2016-06-14       Impact factor: 4.511

8.  Somatic instability of the expanded GAA repeats in Friedreich's ataxia.

Authors:  Ashlee Long; Jill S Napierala; Urszula Polak; Lauren Hauser; Arnulf H Koeppen; David R Lynch; Marek Napierala
Journal:  PLoS One       Date:  2017-12-19       Impact factor: 3.240

9.  A Comprehensive Transcriptome Analysis Identifies FXN and BDNF as Novel Targets of miRNAs in Friedreich's Ataxia Patients.

Authors:  Julia O Misiorek; Anna M Schreiber; Martyna O Urbanek-Trzeciak; Magdalena Jazurek-Ciesiołka; Lauren A Hauser; David R Lynch; Jill S Napierala; Marek Napierala
Journal:  Mol Neurobiol       Date:  2020-04-14       Impact factor: 5.590

10.  Iron Hack - A symposium/hackathon focused on porphyrias, Friedreich's ataxia, and other rare iron-related diseases.

Authors:  Gloria C Ferreira; Jenna Oberstaller; Renée Fonseca; Thomas E Keller; Swamy Rakesh Adapa; Justin Gibbons; Chengqi Wang; Xiaoming Liu; Chang Li; Minh Pham; Guy W Dayhoff Ii; Ben Busby; Rays H Y Jiang; Linh M Duong; Luis Tañón Reyes; Luciano Enrique Laratelli; Douglas Franz; Segun Fatumo; Atm Golam Bari; Audrey Freischel; Lindsey Fiedler; Omkar Dokur; Krishna Sharma; Deborah Cragun
Journal:  F1000Res       Date:  2019-07-19
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