Literature DB >> 26992178

Super-Thresholding: Supervised Thresholding of Protein Crystal Images.

Imren Dinc, Semih Dinc, Madhav Sigdel, Madhu S Sigdel, Marc L Pusey, Ramazan S Aygun.   

Abstract

In general, a single thresholding technique is developed or enhanced to separate foreground objects from background for a domain of images. This idea may not generate satisfactory results for all images in a dataset, since different images may require different types of thresholding methods for proper binarization or segmentation. To overcome this limitation, in this study, we propose a novel approach called "super-thresholding" that utilizes a supervised classifier to decide an appropriate thresholding method for a specific image. This method provides a generic framework that allows selection of the best thresholding method among different thresholding techniques that are beneficial for the problem domain. A classifier model is built using features extracted priori from the original image only or posteriori by analyzing the outputs of thresholding methods and the original image. This model is applied to identify the thresholding method for new images of the domain. We performed our method on protein crystallization images, and then we compared our results with six thresholding techniques. Numerical results are provided using four different correctness measurements. Super-thresholding outperforms the best single thresholding method around 10 percent, and it gives the best performance for protein crystallization dataset in our experiments.

Entities:  

Mesh:

Substances:

Year:  2016        PMID: 26992178      PMCID: PMC5590758          DOI: 10.1109/TCBB.2016.2542811

Source DB:  PubMed          Journal:  IEEE/ACM Trans Comput Biol Bioinform        ISSN: 1545-5963            Impact factor:   3.710


  8 in total

1.  Comparison of the predicted and observed secondary structure of T4 phage lysozyme.

Authors:  B W Matthews
Journal:  Biochim Biophys Acta       Date:  1975-10-20

2.  Contour detection and hierarchical image segmentation.

Authors:  Pablo Arbeláez; Michael Maire; Charless Fowlkes; Jitendra Malik
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2011-05       Impact factor: 6.226

3.  Feature selection based on mutual information: criteria of max-dependency, max-relevance, and min-redundancy.

Authors:  Hanchuan Peng; Fuhui Long; Chris Ding
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2005-08       Impact factor: 6.226

4.  Spatially adaptive wavelet thresholding with context modeling for image denoising.

Authors:  S G Chang; B Yu; M Vetterli
Journal:  IEEE Trans Image Process       Date:  2000       Impact factor: 10.856

Review 5.  Introduction to protein crystallization.

Authors:  Alexander McPherson; Jose A Gavira
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2013-12-24       Impact factor: 1.056

6.  Protein crystallization analysis on the World Community Grid.

Authors:  Christian A Cumbaa; Igor Jurisica
Journal:  J Struct Funct Genomics       Date:  2010-01-14

7.  Real-Time Protein Crystallization Image Acquisition and Classification System.

Authors:  Madhav Sigdel; Marc L Pusey; Ramazan S Aygun
Journal:  Cryst Growth Des       Date:  2013-07-03       Impact factor: 4.076

8.  FocusALL: Focal Stacking of Microscopic Images Using Modified Harris Corner Response Measure.

Authors:  Madhu S Sigdel; Madhav Sigdel; Semih Dinç; Imren Dinç; Marc L Pusey; Ramazan S Aygün
Journal:  IEEE/ACM Trans Comput Biol Bioinform       Date:  2016 Mar-Apr       Impact factor: 3.710

  8 in total
  2 in total

1.  Protein Crystallization Segmentation and Classification Using Subordinate Color Channel in Fluorescence Microscopy Images.

Authors:  Truong X Tran; Marc L Pusey; Ramazan S Aygun
Journal:  J Fluoresc       Date:  2020-04-20       Impact factor: 2.217

2.  Feature analysis for classification of trace fluorescent labeled protein crystallization images.

Authors:  Madhav Sigdel; Imren Dinc; Madhu S Sigdel; Semih Dinc; Marc L Pusey; Ramazan S Aygun
Journal:  BioData Min       Date:  2017-04-27       Impact factor: 2.522

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.