Literature DB >> 26990753

The evolving landscape of imprinted genes in humans and mice: Conflict among alleles, genes, tissues, and kin.

Jon F Wilkins1, Francisco Úbeda2, Jeremy Van Cleve3.   

Abstract

Three recent genome-wide studies in mice and humans have produced the most definitive map to date of genomic imprinting (gene expression that depends on parental origin) by incorporating multiple tissue types and developmental stages. Here, we explore the results of these studies in light of the kinship theory of genomic imprinting, which predicts that imprinting evolves due to differential genetic relatedness between maternal and paternal relatives. The studies produce a list of imprinted genes with around 120-180 in mice and ~100 in humans. The studies agree on broad patterns across mice and humans including the complex patterns of imprinted expression at loci like Igf2 and Grb10. We discuss how the kinship theory provides a powerful framework for hypotheses that can explain these patterns. Finally, since imprinting is rare in the genome despite predictions from the kinship theory that it might be common, we discuss evolutionary factors that could favor biallelic expression.
© 2016 WILEY Periodicals, Inc.

Entities:  

Keywords:  Grb10; Igf2; RNA-seq; genome-wide map; genomic imprinting; intragenomic conflict; kinship theory

Mesh:

Substances:

Year:  2016        PMID: 26990753     DOI: 10.1002/bies.201500198

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  13 in total

1.  DNA methylation of imprinted genes in Mexican-American newborn children with prenatal phthalate exposure.

Authors:  Gwen Tindula; Susan K Murphy; Carole Grenier; Zhiqing Huang; Karen Huen; Maria Escudero-Fung; Asa Bradman; Brenda Eskenazi; Cathrine Hoyo; Nina Holland
Journal:  Epigenomics       Date:  2018-06-29       Impact factor: 4.778

2.  Intragenomic conflict over bet-hedging.

Authors:  Jon F Wilkins; Tanmoy Bhattacharya
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2019-02-18       Impact factor: 6.237

3.  Methods of epigenome editing for probing the function of genomic imprinting.

Authors:  Kira DA Rienecker; Matthew J Hill; Anthony R Isles
Journal:  Epigenomics       Date:  2016-09-14       Impact factor: 4.778

Review 4.  Microbiota and Neurological Disorders: A Gut Feeling.

Authors:  Walter H Moos; Douglas V Faller; David N Harpp; Iphigenia Kanara; Julie Pernokas; Whitney R Powers; Kosta Steliou
Journal:  Biores Open Access       Date:  2016-05-01

5.  Sexual selection modulates genetic conflicts and patterns of genomic imprinting.

Authors:  Gonçalo S Faria; Susana A M Varela; Andy Gardner
Journal:  Evolution       Date:  2017-01-16       Impact factor: 3.694

6.  Impulsive Choice in Mice Lacking Paternal Expression of Grb10 Suggests Intragenomic Conflict in Behavior.

Authors:  Claire L Dent; Trevor Humby; Katie Lewis; Andrew Ward; Reiner Fischer-Colbrie; Lawrence S Wilkinson; Jon F Wilkins; Anthony R Isles
Journal:  Genetics       Date:  2018-03-21       Impact factor: 4.562

7.  The insulin-like growth factor 2 gene in mammals: Organizational complexity within a conserved locus.

Authors:  Kabita Baral; Peter Rotwein
Journal:  PLoS One       Date:  2019-06-28       Impact factor: 3.240

8.  Loss of Imprinting in Human Placentas Is Widespread, Coordinated, and Predicts Birth Phenotypes.

Authors:  Claudius Vincenz; Jennie L Lovett; Weisheng Wu; Kerby Shedden; Beverly I Strassmann
Journal:  Mol Biol Evol       Date:  2020-02-01       Impact factor: 16.240

9.  Genomic imprinting does not reduce the dosage of UBE3A in neurons.

Authors:  Paul R Hillman; Sarah G B Christian; Ryan Doan; Noah D Cohen; Kranti Konganti; Kory Douglas; Xu Wang; Paul B Samollow; Scott V Dindot
Journal:  Epigenetics Chromatin       Date:  2017-05-15       Impact factor: 4.954

10.  Modeling allele-specific expression at the gene and SNP levels simultaneously by a Bayesian logistic mixed regression model.

Authors:  Jing Xie; Tieming Ji; Marco A R Ferreira; Yahan Li; Bhaumik N Patel; Rocio M Rivera
Journal:  BMC Bioinformatics       Date:  2019-10-28       Impact factor: 3.169

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.