Literature DB >> 26981879

Pathway analysis of whole exome sequence data provides further support for the involvement of histone modification in the aetiology of schizophrenia.

David Curtis1.   

Abstract

Weighted burden pathway analysis was applied to whole exome sequence data for 2045 schizophrenic patients and 2045 controls. Overall, there was a statistically significant excess of pathways with more rare, functional variants in cases than in controls. Among the highest ranked were pathways relating to histone modification, as well as neuron differentiation and membrane and vesicle function. This bolsters the evidence from previous studies that histone modification pathways may be important in the aetiology of schizophrenia.

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Year:  2016        PMID: 26981879      PMCID: PMC7172027          DOI: 10.1097/YPG.0000000000000132

Source DB:  PubMed          Journal:  Psychiatr Genet        ISSN: 0955-8829            Impact factor:   2.458


  11 in total

1.  A note on the calculation of empirical P values from Monte Carlo procedures.

Authors:  B V North; D Curtis; P C Sham
Journal:  Am J Hum Genet       Date:  2002-08       Impact factor: 11.025

2.  Incorporating Functional Information in Tests of Excess De Novo Mutational Load.

Authors:  Yu Jiang; Yujun Han; Slavé Petrovski; Kouros Owzar; David B Goldstein; Andrew S Allen
Journal:  Am J Hum Genet       Date:  2015-07-30       Impact factor: 11.025

3.  Loss-of-function variants in schizophrenia risk and SETD1A as a candidate susceptibility gene.

Authors:  Atsushi Takata; Bin Xu; Iuliana Ionita-Laza; J Louw Roos; Joseph A Gogos; Maria Karayiorgou
Journal:  Neuron       Date:  2014-05-21       Impact factor: 17.173

4.  Investigation of Recessive Effects in Schizophrenia Using Next-Generation Exome Sequence Data.

Authors:  David Curtis
Journal:  Ann Hum Genet       Date:  2015-03-27       Impact factor: 1.670

5.  Critical Role of Histone Turnover in Neuronal Transcription and Plasticity.

Authors:  Ian Maze; Wendy Wenderski; Kyung-Min Noh; Rosemary C Bagot; Nikos Tzavaras; Immanuel Purushothaman; Simon J Elsässer; Yin Guo; Carolina Ionete; Yasmin L Hurd; Carol A Tamminga; Tobias Halene; Lorna Farrelly; Alexey A Soshnev; Duancheng Wen; Shahin Rafii; Marc R Birtwistle; Schahram Akbarian; Bruce A Buchholz; Robert D Blitzer; Eric J Nestler; Zuo-Fei Yuan; Benjamin A Garcia; Li Shen; Henrik Molina; C David Allis
Journal:  Neuron       Date:  2015-07-01       Impact factor: 17.173

6.  Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.

Authors:  Aravind Subramanian; Pablo Tamayo; Vamsi K Mootha; Sayan Mukherjee; Benjamin L Ebert; Michael A Gillette; Amanda Paulovich; Scott L Pomeroy; Todd R Golub; Eric S Lander; Jill P Mesirov
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-30       Impact factor: 11.205

7.  Psychiatric genome-wide association study analyses implicate neuronal, immune and histone pathways.

Authors: 
Journal:  Nat Neurosci       Date:  2015-01-19       Impact factor: 24.884

8.  A polygenic burden of rare disruptive mutations in schizophrenia.

Authors:  Shaun M Purcell; Jennifer L Moran; Menachem Fromer; Douglas Ruderfer; Nadia Solovieff; Panos Roussos; Colm O'Dushlaine; Kimberly Chambert; Sarah E Bergen; Anna Kähler; Laramie Duncan; Eli Stahl; Giulio Genovese; Esperanza Fernández; Mark O Collins; Noboru H Komiyama; Jyoti S Choudhary; Patrik K E Magnusson; Eric Banks; Khalid Shakir; Kiran Garimella; Tim Fennell; Mark DePristo; Seth G N Grant; Stephen J Haggarty; Stacey Gabriel; Edward M Scolnick; Eric S Lander; Christina M Hultman; Patrick F Sullivan; Steven A McCarroll; Pamela Sklar
Journal:  Nature       Date:  2014-01-22       Impact factor: 49.962

9.  Rare loss-of-function variants in SETD1A are associated with schizophrenia and developmental disorders.

Authors:  Tarjinder Singh; Mitja I Kurki; David Curtis; Shaun M Purcell; Lucy Crooks; Jeremy McRae; Jaana Suvisaari; Himanshu Chheda; Douglas Blackwood; Gerome Breen; Olli Pietiläinen; Sebastian S Gerety; Muhammad Ayub; Moira Blyth; Trevor Cole; David Collier; Eve L Coomber; Nick Craddock; Mark J Daly; John Danesh; Marta DiForti; Alison Foster; Nelson B Freimer; Daniel Geschwind; Mandy Johnstone; Shelagh Joss; Georg Kirov; Jarmo Körkkö; Outi Kuismin; Peter Holmans; Christina M Hultman; Conrad Iyegbe; Jouko Lönnqvist; Minna Männikkö; Steve A McCarroll; Peter McGuffin; Andrew M McIntosh; Andrew McQuillin; Jukka S Moilanen; Carmel Moore; Robin M Murray; Ruth Newbury-Ecob; Willem Ouwehand; Tiina Paunio; Elena Prigmore; Elliott Rees; David Roberts; Jennifer Sambrook; Pamela Sklar; David St Clair; Juha Veijola; James T R Walters; Hywel Williams; Patrick F Sullivan; Matthew E Hurles; Michael C O'Donovan; Aarno Palotie; Michael J Owen; Jeffrey C Barrett
Journal:  Nat Neurosci       Date:  2016-03-14       Impact factor: 24.884

10.  A rapid method for combined analysis of common and rare variants at the level of a region, gene, or pathway.

Authors:  David Curtis
Journal:  Adv Appl Bioinform Chem       Date:  2012-07-24
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  9 in total

Review 1.  Histone Modifications in Neurological Disorders.

Authors:  Bradley J Smith; Victor Corasolla Carregari
Journal:  Adv Exp Med Biol       Date:  2022       Impact factor: 3.650

2.  A weighted burden test using logistic regression for integrated analysis of sequence variants, copy number variants and polygenic risk score.

Authors:  David Curtis
Journal:  Eur J Hum Genet       Date:  2018-09-26       Impact factor: 4.246

3.  Analysis of 200,000 Exome-Sequenced UK Biobank Subjects Implicates Genes Involved in Increased and Decreased Risk of Hypertension.

Authors:  David Curtis
Journal:  Pulse (Basel)       Date:  2021-07-05

4.  Discovery of rare variants implicated in schizophrenia using next-generation sequencing.

Authors:  Raina Rhoades; Fatimah Jackson; Shaolei Teng
Journal:  J Transl Genet Genom       Date:  2019-01-20

5.  Investigation of Association of Rare, Functional Genetic Variants With Heavy Drinking and Problem Drinking in Exome Sequenced UK Biobank Participants.

Authors:  David Curtis
Journal:  Alcohol Alcohol       Date:  2022-07-09       Impact factor: 3.913

6.  Weighted Burden Analysis of Exome-Sequenced Case-Control Sample Implicates Synaptic Genes in Schizophrenia Aetiology.

Authors:  David Curtis; Leda Coelewij; Shou-Hwa Liu; Jack Humphrey; Richard Mott
Journal:  Behav Genet       Date:  2018-03-21       Impact factor: 2.805

7.  Identification of potential genetic risk factors for bipolar disorder by whole-exome sequencing.

Authors:  Thomas Husson; Jean-Baptiste Duboc; Olivier Quenez; Camille Charbonnier; Maud Rotharmel; Macarena Cuenca; Xavier Jegouzo; Anne-Claire Richard; Thierry Frebourg; Jean-François Deleuze; Anne Boland; Emmanuelle Genin; Stéphanie Debette; Christophe Tzourio; Dominique Campion; Gaël Nicolas; Olivier Guillin
Journal:  Transl Psychiatry       Date:  2018-12-05       Impact factor: 6.222

8.  Long non-coding RNA-associated competing endogenous RNA axes in the olfactory epithelium in schizophrenia: a bioinformatics analysis.

Authors:  Hani Sabaie; Marziyeh Mazaheri Moghaddam; Madiheh Mazaheri Moghaddam; Nazanin Amirinejad; Mohammad Reza Asadi; Yousef Daneshmandpour; Bashdar Mahmud Hussen; Mohammad Taheri; Maryam Rezazadeh
Journal:  Sci Rep       Date:  2021-12-30       Impact factor: 4.379

9.  Do damaging variants of SLC6A9, the gene for the glycine transporter 1 (GlyT-1), protect against schizophrenia?

Authors:  David Curtis
Journal:  Psychiatr Genet       Date:  2020-10       Impact factor: 2.574

  9 in total

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