Literature DB >> 33981965

Discovery of rare variants implicated in schizophrenia using next-generation sequencing.

Raina Rhoades1, Fatimah Jackson1, Shaolei Teng1.   

Abstract

Schizophrenia is a highly heritable psychiatric disorder that affects 1% of the population. Genome-wide association studies have identified common variants in candidate genes associated with schizophrenia, but the genetics mechanisms of this disorder have not yet been elucidated. The discovery of rare genetic variants that contribute to schizophrenia symptoms promises to help explain the missing heritability of the disease. Next generation sequencing techniques are revolutionizing the field of psychiatric genetics. Various statistical approaches have been developed for rare variant association testing in case-control and family studies. Targeted resequencing, whole exome sequencing and whole genome sequencing combined with these computational tools are used for the discovery of rare genetic variations in schizophrenia. The findings provide useful information for characterizing the rare mutations and elucidating the genetic mechanisms by which the variants cause schizophrenia.

Entities:  

Keywords:  Rare variant; next-generation sequencing; rare variant association study; schizophrenia; targeted resequencing; whole exome sequencing; whole genome sequencing

Year:  2019        PMID: 33981965      PMCID: PMC8112455          DOI: 10.20517/jtgg.2018.26

Source DB:  PubMed          Journal:  J Transl Genet Genom        ISSN: 2578-5281


  135 in total

Review 1.  Five years of GWAS discovery.

Authors:  Peter M Visscher; Matthew A Brown; Mark I McCarthy; Jian Yang
Journal:  Am J Hum Genet       Date:  2012-01-13       Impact factor: 11.025

2.  Methods for detecting associations with rare variants for common diseases: application to analysis of sequence data.

Authors:  Bingshan Li; Suzanne M Leal
Journal:  Am J Hum Genet       Date:  2008-08-07       Impact factor: 11.025

3.  Excess of rare novel loss-of-function variants in synaptic genes in schizophrenia and autism spectrum disorders.

Authors:  E M Kenny; P Cormican; S Furlong; E Heron; G Kenny; C Fahey; E Kelleher; S Ennis; D Tropea; R Anney; A P Corvin; G Donohoe; L Gallagher; M Gill; D W Morris
Journal:  Mol Psychiatry       Date:  2013-10-15       Impact factor: 15.992

4.  Pathway-wide association study identifies five shared pathways associated with schizophrenia in three ancestral distinct populations.

Authors:  C Liu; C A Bousman; C Pantelis; E Skafidas; D Zhang; W Yue; I P Everall
Journal:  Transl Psychiatry       Date:  2017-02-21       Impact factor: 6.222

5.  Schizophrenia, bacterial toxins and the genetics of redundancy.

Authors:  J A Morris
Journal:  Med Hypotheses       Date:  1996-04       Impact factor: 1.538

6.  A unified test of linkage analysis and rare-variant association for analysis of pedigree sequence data.

Authors:  Hao Hu; Jared C Roach; Hilary Coon; Stephen L Guthery; Karl V Voelkerding; Rebecca L Margraf; Jacob D Durtschi; Sean V Tavtigian; Wilfred Wu; Paul Scheet; Shuoguo Wang; Jinchuan Xing; Gustavo Glusman; Robert Hubley; Hong Li; Vidu Garg; Barry Moore; Leroy Hood; David J Galas; Deepak Srivastava; Martin G Reese; Lynn B Jorde; Mark Yandell; Chad D Huff
Journal:  Nat Biotechnol       Date:  2014-05-18       Impact factor: 54.908

7.  Rare variant association studies: considerations, challenges and opportunities.

Authors:  Paul L Auer; Guillaume Lettre
Journal:  Genome Med       Date:  2015-02-23       Impact factor: 11.117

8.  The contribution of rare variants to risk of schizophrenia in individuals with and without intellectual disability.

Authors:  Tarjinder Singh; James T R Walters; Mandy Johnstone; David Curtis; Jaana Suvisaari; Minna Torniainen; Elliott Rees; Conrad Iyegbe; Douglas Blackwood; Andrew M McIntosh; Georg Kirov; Daniel Geschwind; Robin M Murray; Marta Di Forti; Elvira Bramon; Michael Gandal; Christina M Hultman; Pamela Sklar; Aarno Palotie; Patrick F Sullivan; Michael C O'Donovan; Michael J Owen; Jeffrey C Barrett
Journal:  Nat Genet       Date:  2017-06-26       Impact factor: 38.330

9.  MARV: a tool for genome-wide multi-phenotype analysis of rare variants.

Authors:  Marika Kaakinen; Reedik Mägi; Krista Fischer; Jani Heikkinen; Marjo-Riitta Järvelin; Andrew P Morris; Inga Prokopenko
Journal:  BMC Bioinformatics       Date:  2017-02-16       Impact factor: 3.169

10.  708 Common and 2010 rare DISC1 locus variants identified in 1542 subjects: analysis for association with psychiatric disorder and cognitive traits.

Authors:  P A Thomson; J S Parla; A F McRae; M Kramer; K Ramakrishnan; J Yao; D C Soares; S McCarthy; S W Morris; L Cardone; S Cass; E Ghiban; W Hennah; K L Evans; D Rebolini; J K Millar; S E Harris; J M Starr; D J MacIntyre; A M McIntosh; J D Watson; I J Deary; P M Visscher; D H Blackwood; W R McCombie; D J Porteous
Journal:  Mol Psychiatry       Date:  2013-06-04       Impact factor: 15.992

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.