Literature DB >> 26977345

Wide field-of-view fluorescence image deconvolution with aberration-estimation from Fourier ptychography.

Jaebum Chung1, Jinho Kim1, Xiaoze Ou1, Roarke Horstmeyer1, Changhuei Yang1.   

Abstract

This paper presents a method to simultaneously acquire an aberration-corrected, wide field-of-view fluorescence image and a high-resolution coherent bright-field image using a computational microscopy method. First, the procedure applies Fourier ptychographic microscopy (FPM) to retrieve the amplitude and phase of a sample, at a resolution that significantly exceeds the cutoff spatial frequency of the microscope objective lens. At the same time, redundancy within the set of acquired FPM bright-field images offers a means to estimate microscope aberrations. Second, the procedure acquires an aberrated fluorescence image, and computationally improves its resolution through deconvolution with the estimated aberration map. An experimental demonstration successfully improves the bright-field resolution of fixed, stained and fluorescently tagged HeLa cells by a factor of 4.9, and reduces the error caused by aberrations in a fluorescence image by up to 31%, over a field of view of 6.2 mm by 9.3 mm. For optimal deconvolution, we show the fluorescence image needs to have a signal-to-noise ratio of at least ~18.

Keywords:  (070.0070) Fourier optics and signal processing; (180.2520) Fluorescence microscopy

Year:  2016        PMID: 26977345      PMCID: PMC4771454          DOI: 10.1364/BOE.7.000352

Source DB:  PubMed          Journal:  Biomed Opt Express        ISSN: 2156-7085            Impact factor:   3.732


  34 in total

1.  Phase retrieval, error reduction algorithm, and Fienup variants: a view from convex optimization.

Authors:  Heinz H Bauschke; Patrick L Combettes; D Russell Luke
Journal:  J Opt Soc Am A Opt Image Sci Vis       Date:  2002-07       Impact factor: 2.129

2.  Phase retrieval for high-numerical-aperture optical systems.

Authors:  Bridget M Hanser; Mats G L Gustafsson; David A Agard; John W Sedat
Journal:  Opt Lett       Date:  2003-05-15       Impact factor: 3.776

3.  Sparsity based sub-wavelength imaging with partially incoherent light via quadratic compressed sensing.

Authors:  Yoav Shechtman; Yonina C Eldar; Alexander Szameit; Mordechai Segev
Journal:  Opt Express       Date:  2011-08-01       Impact factor: 3.894

Review 4.  Fluorescence microscopy.

Authors:  Jeff W Lichtman; José-Angel Conchello
Journal:  Nat Methods       Date:  2005-12       Impact factor: 28.547

5.  Probe retrieval in ptychographic coherent diffractive imaging.

Authors:  Pierre Thibault; Martin Dierolf; Oliver Bunk; Andreas Menzel; Franz Pfeiffer
Journal:  Ultramicroscopy       Date:  2009-01-04       Impact factor: 2.689

6.  Phase retrieval with transverse translation diversity: a nonlinear optimization approach.

Authors:  Manuel Guizar-Sicairos; James R Fienup
Journal:  Opt Express       Date:  2008-05-12       Impact factor: 3.894

7.  Quantitative phase imaging via Fourier ptychographic microscopy.

Authors:  Xiaoze Ou; Roarke Horstmeyer; Changhuei Yang; Guoan Zheng
Journal:  Opt Lett       Date:  2013-11-15       Impact factor: 3.776

Review 8.  Long-term single-cell imaging of mammalian stem cells.

Authors:  Timm Schroeder
Journal:  Nat Methods       Date:  2011-03-30       Impact factor: 28.547

9.  Wide-field, high-resolution Fourier ptychographic microscopy.

Authors:  Guoan Zheng; Roarke Horstmeyer; Changhuei Yang
Journal:  Nat Photonics       Date:  2013-09-01       Impact factor: 38.771

10.  Fourier ptychographic microscopy for filtration-based circulating tumor cell enumeration and analysis.

Authors:  Anthony Williams; Jaebum Chung; Xiaoze Ou; Guoan Zheng; Siddarth Rawal; Zheng Ao; Ram Datar; Changhuei Yang; Richard Cote
Journal:  J Biomed Opt       Date:  2014-06       Impact factor: 3.170

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  6 in total

1.  Wide-field Fourier ptychographic microscopy using laser illumination source.

Authors:  Jaebum Chung; Hangwen Lu; Xiaoze Ou; Haojiang Zhou; Changhuei Yang
Journal:  Biomed Opt Express       Date:  2016-10-31       Impact factor: 3.732

2.  Motion-corrected Fourier ptychography.

Authors:  Liheng Bian; Guoan Zheng; Kaikai Guo; Jinli Suo; Changhuei Yang; Feng Chen; Qionghai Dai
Journal:  Biomed Opt Express       Date:  2016-10-12       Impact factor: 3.732

3.  Incubator embedded cell culture imaging system (EmSight) based on Fourier ptychographic microscopy.

Authors:  Jinho Kim; Beverley M Henley; Charlene H Kim; Henry A Lester; Changhuei Yang
Journal:  Biomed Opt Express       Date:  2016-07-22       Impact factor: 3.732

4.  Review of bio-optical imaging systems with a high space-bandwidth product.

Authors:  Jongchan Park; David J Brady; Guoan Zheng; Lei Tian; Liang Gao
Journal:  Adv Photonics       Date:  2021-06-26

5.  Parallel Fourier ptychographic microscopy for high-throughput screening with 96 cameras (96 Eyes).

Authors:  Antony C S Chan; Jinho Kim; An Pan; Han Xu; Dana Nojima; Christopher Hale; Songli Wang; Changhuei Yang
Journal:  Sci Rep       Date:  2019-07-31       Impact factor: 4.379

6.  Fourier ptychographic reconstruction using Poisson maximum likelihood and truncated Wirtinger gradient.

Authors:  Liheng Bian; Jinli Suo; Jaebum Chung; Xiaoze Ou; Changhuei Yang; Feng Chen; Qionghai Dai
Journal:  Sci Rep       Date:  2016-06-10       Impact factor: 4.379

  6 in total

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