Literature DB >> 26965324

Chemometric methods in data processing of mass spectrometry-based metabolomics: A review.

Lunzhao Yi1, Naiping Dong2, Yonghuan Yun3, Baichuan Deng4, Dabing Ren5, Shao Liu6, Yizeng Liang3.   

Abstract

This review focuses on recent and potential advances in chemometric methods in relation to data processing in metabolomics, especially for data generated from mass spectrometric techniques. Metabolomics is gradually being regarded a valuable and promising biotechnology rather than an ambitious advancement. Herein, we outline significant developments in metabolomics, especially in the combination with modern chemical analysis techniques, and dedicated statistical, and chemometric data analytical strategies. Advanced skills in the preprocessing of raw data, identification of metabolites, variable selection, and modeling are illustrated. We believe that insights from these developments will help narrow the gap between the original dataset and current biological knowledge. We also discuss the limitations and perspectives of extracting information from high-throughput datasets.
Copyright © 2016 Elsevier B.V. All rights reserved.

Keywords:  Biomarker; Chemometrics; Data preprocessing; Identification of metabolites; Metabolomics; Modeling

Mesh:

Year:  2016        PMID: 26965324     DOI: 10.1016/j.aca.2016.02.001

Source DB:  PubMed          Journal:  Anal Chim Acta        ISSN: 0003-2670            Impact factor:   6.558


  33 in total

Review 1.  Metabolomic Studies in Drosophila.

Authors:  James E Cox; Carl S Thummel; Jason M Tennessen
Journal:  Genetics       Date:  2017-07       Impact factor: 4.562

2.  Suspect and non-target screening of acutely toxic Prymnesium parvum.

Authors:  Raegyn B Taylor; Bridgett N Hill; Jonathan M Bobbitt; Amanda S Hering; Bryan W Brooks; C Kevin Chambliss
Journal:  Sci Total Environ       Date:  2020-01-21       Impact factor: 7.963

Review 3.  Towards quantitative mass spectrometry-based metabolomics in microbial and mammalian systems.

Authors:  Rahul Vijay Kapoore; Seetharaman Vaidyanathan
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2016-10-28       Impact factor: 4.226

4.  Using In Silico Fragmentation to Improve Routine Residue Screening in Complex Matrices.

Authors:  Anton Kaufmann; Patrick Butcher; Kathryn Maden; Stephan Walker; Mirjam Widmer
Journal:  J Am Soc Mass Spectrom       Date:  2017-09-12       Impact factor: 3.109

5.  Quantitative non-targeted analysis: Bridging the gap between contaminant discovery and risk characterization.

Authors:  James P McCord; Louis C Groff; Jon R Sobus
Journal:  Environ Int       Date:  2021-12-02       Impact factor: 9.621

Review 6.  Trends in the application of high-resolution mass spectrometry for human biomonitoring: An analytical primer to studying the environmental chemical space of the human exposome.

Authors:  Syam S Andra; Christine Austin; Dhavalkumar Patel; Georgia Dolios; Mahmoud Awawda; Manish Arora
Journal:  Environ Int       Date:  2017-01-04       Impact factor: 9.621

7.  Multidataset Independent Subspace Analysis With Application to Multimodal Fusion.

Authors:  Rogers F Silva; Sergey M Plis; Tulay Adali; Marios S Pattichis; Vince D Calhoun
Journal:  IEEE Trans Image Process       Date:  2020-11-25       Impact factor: 10.856

8.  Diet-sourced carbon-based nanoparticles induce lipid alterations in tissues of zebrafish (Danio rerio) with genomic hypermethylation changes in brain.

Authors:  Eva Gorrochategui; Junyi Li; Nigel J Fullwood; Guang-Guo Ying; Meiping Tian; Li Cui; Heqing Shen; Sílvia Lacorte; Romà Tauler; Francis L Martin
Journal:  Mutagenesis       Date:  2016-10-26       Impact factor: 3.000

9.  Changes of Metabolomic Profile in Helianthus annuus under Exposure to Chromium(VI) Studied by capHPLC-ESI-QTOF-MS and MS/MS.

Authors:  Alan Alexander Gonzalez Ibarra; Kazimierz Wrobel; Eunice Yanez Barrientos; Alma Rosa Corrales Escobosa; J Felix Gutierrez Corona; Israel Enciso Donis; Katarzyna Wrobel
Journal:  J Anal Methods Chem       Date:  2017-11-22       Impact factor: 2.193

10.  PG-Metrics: A chemometric-based approach for classifying bacterial peptidoglycan data sets and uncovering their subjacent chemical variability.

Authors:  Keshav Kumar; Akbar Espaillat; Felipe Cava
Journal:  PLoS One       Date:  2017-10-17       Impact factor: 3.240

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