Literature DB >> 26958234

Drug-drug Interaction Discovery Using Abstraction Networks for "National Drug File - Reference Terminology" Chemical Ingredients.

Christopher Ochs1, Ling Zheng1, Huanying Gu2, Yehoshua Perl1, James Geller1, Joan Kapusnik-Uner3, Aleksandr Zakharchenko1.   

Abstract

The National Drug File - Reference Terminology (NDF-RT) is a large and complex drug terminology. NDF-RT provides important information about clinical drugs, e.g., their chemical ingredients, mechanisms of action, dosage form and physiological effects. Within NDF-RT such information is represented using tens of thousands of roles. It is difficult to comprehend large, complex terminologies like NDF-RT. In previous studies, we introduced abstraction networks to summarize the content and structure of terminologies. In this paper, we introduce the Ingredient Abstraction Network to summarize NDF-RT's Chemical Ingredients and their associated drugs. Additionally, we introduce the Aggregate Ingredient Abstraction Network, for controlling the granularity of summarization provided by the Ingredient Abstraction Network. The Ingredient Abstraction Network is used to support the discovery of new candidate drug-drug interactions (DDIs) not appearing in First Databank, Inc.'s DDI knowledgebase.

Mesh:

Year:  2015        PMID: 26958234      PMCID: PMC4765653     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  12 in total

1.  SNOMED clinical terms: overview of the development process and project status.

Authors:  M Q Stearns; C Price; K A Spackman; A Y Wang
Journal:  Proc AMIA Symp       Date:  2001

2.  Initializing the VA medication reference terminology using UMLS metathesaurus co-occurrences.

Authors:  John S Carter; Steven H Brown; Mark S Erlbaum; William Gregg; Peter L Elkin; Ted Speroff; Mark S Tuttle
Journal:  Proc AMIA Symp       Date:  2002

3.  Using RxNorm and NDF-RT to classify medication data extracted from electronic health records: experiences from the Rochester Epidemiology Project.

Authors:  Jyotishman Pathak; Sean P Murphy; Brian N Willaert; Hilal M Kremers; Barbara P Yawn; Walter A Rocca; Christopher G Chute
Journal:  AMIA Annu Symp Proc       Date:  2011-10-22

4.  Structural methodologies for auditing SNOMED.

Authors:  Yue Wang; Michael Halper; Hua Min; Yehoshua Perl; Yan Chen; Kent A Spackman
Journal:  J Biomed Inform       Date:  2006-12-24       Impact factor: 6.317

5.  Categorical information in pharmaceutical terminologies.

Authors:  John S Carter; Steven H Brown; Brent A Bauer; Peter L Elkin; Mark S Erlbaum; David A Froehling; Michael J Lincoln; S Trent Rosenbloom; Dietlind L Wahner-Roedler; Mark S Tuttle
Journal:  AMIA Annu Symp Proc       Date:  2006

6.  Auditing as part of the terminology design life cycle.

Authors:  Hua Min; Yehoshua Perl; Yan Chen; Michael Halper; James Geller; Yue Wang
Journal:  J Am Med Inform Assoc       Date:  2006-08-23       Impact factor: 4.497

7.  A tribal abstraction network for SNOMED CT target hierarchies without attribute relationships.

Authors:  Christopher Ochs; James Geller; Yehoshua Perl; Yan Chen; Ankur Agrawal; James T Case; George Hripcsak
Journal:  J Am Med Inform Assoc       Date:  2014-10-20       Impact factor: 4.497

Review 8.  Abstraction networks for terminologies: Supporting management of "big knowledge".

Authors:  Michael Halper; Huanying Gu; Yehoshua Perl; Christopher Ochs
Journal:  Artif Intell Med       Date:  2015-04-02       Impact factor: 5.326

9.  Abstraction of complex concepts with a refined partial-area taxonomy of SNOMED.

Authors:  Yue Wang; Michael Halper; Duo Wei; Yehoshua Perl; James Geller
Journal:  J Biomed Inform       Date:  2011-08-25       Impact factor: 6.317

10.  Overview and utilization of the NCI thesaurus.

Authors:  Gilberto Fragoso; Sherri de Coronado; Margaret Haber; Frank Hartel; Larry Wright
Journal:  Comp Funct Genomics       Date:  2004
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  7 in total

1.  Utilizing a structural meta-ontology for family-based quality assurance of the BioPortal ontologies.

Authors:  Christopher Ochs; Zhe He; Ling Zheng; James Geller; Yehoshua Perl; George Hripcsak; Mark A Musen
Journal:  J Biomed Inform       Date:  2016-03-14       Impact factor: 6.317

2.  Analyzing structural changes in SNOMED CT's Bacterial infectious diseases using a visual semantic delta.

Authors:  Christopher Ochs; James T Case; Yehoshua Perl
Journal:  J Biomed Inform       Date:  2017-02-12       Impact factor: 6.317

3.  Quality assurance of chemical ingredient classification for the National Drug File - Reference Terminology.

Authors:  Ling Zheng; Hasan Yumak; Ling Chen; Christopher Ochs; James Geller; Joan Kapusnik-Uner; Yehoshua Perl
Journal:  J Biomed Inform       Date:  2017-07-16       Impact factor: 6.317

Review 4.  Introducing the Big Knowledge to Use (BK2U) challenge.

Authors:  Yehoshua Perl; James Geller; Michael Halper; Christopher Ochs; Ling Zheng; Joan Kapusnik-Uner
Journal:  Ann N Y Acad Sci       Date:  2016-10-17       Impact factor: 5.691

5.  A unified software framework for deriving, visualizing, and exploring abstraction networks for ontologies.

Authors:  Christopher Ochs; James Geller; Yehoshua Perl; Mark A Musen
Journal:  J Biomed Inform       Date:  2016-06-23       Impact factor: 6.317

6.  Visual comprehension and orientation into the COVID-19 CIDO ontology.

Authors:  Ling Zheng; Yehoshua Perl; Yongqun He; Christopher Ochs; James Geller; Hao Liu; Vipina K Keloth
Journal:  J Biomed Inform       Date:  2021-07-02       Impact factor: 8.000

7.  An accurate and precise representation of drug ingredients.

Authors:  Josh Hanna; Jiang Bian; William R Hogan
Journal:  J Biomed Semantics       Date:  2016-04-19
  7 in total

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