Literature DB >> 22195170

Using RxNorm and NDF-RT to classify medication data extracted from electronic health records: experiences from the Rochester Epidemiology Project.

Jyotishman Pathak1, Sean P Murphy, Brian N Willaert, Hilal M Kremers, Barbara P Yawn, Walter A Rocca, Christopher G Chute.   

Abstract

RxNorm and NDF-RT published by the National Library of Medicine (NLM) and Veterans Affairs (VA), respectively, are two publicly available federal medication terminologies. In this study, we evaluate the applicability of RxNorm and National Drug File-Reference Terminology (NDF-RT) for extraction and classification of medication data retrieved using structured querying and natural language processing techniques from electronic health records at two different medical centers within the Rochester Epidemiology Project (REP). Specifically, we explore how mappings between RxNorm concept codes and NDF-RT drug classes can be leveraged for hierarchical organization and grouping of REP medication data, identify gaps and coverage issues, and analyze the recently released NLM's NDF-RT Web service API. Our study concludes that RxNorm and NDF-RT can be applied together for classification of medication extracted from multiple EHR systems, although several issues and challenges remain to be addressed. We further conclude that the Web service APIs developed by the NLM provide useful functionalities for such activities.

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Year:  2011        PMID: 22195170      PMCID: PMC3243205     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  11 in total

1.  Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications.

Authors:  Guergana K Savova; James J Masanz; Philip V Ogren; Jiaping Zheng; Sunghwan Sohn; Karin C Kipper-Schuler; Christopher G Chute
Journal:  J Am Med Inform Assoc       Date:  2010 Sep-Oct       Impact factor: 4.497

2.  Analyzing categorical information in two publicly available drug terminologies: RxNorm and NDF-RT.

Authors:  Jyotishman Pathak; Christopher G Chute
Journal:  J Am Med Inform Assoc       Date:  2010 Jul-Aug       Impact factor: 4.497

3.  Medication and indication linkage: A practical therapy for the problem list?

Authors:  Matthew M Burton; Linas Simonaitis; Gunther Schadow
Journal:  AMIA Annu Symp Proc       Date:  2008-11-06

Review 4.  Desiderata for controlled medical vocabularies in the twenty-first century.

Authors:  J J Cimino
Journal:  Methods Inf Med       Date:  1998-11       Impact factor: 2.176

5.  Enabling Hierarchical View of RxNorm with NDF-RT Drug Classes.

Authors:  Matvey B Palchuk; Michael Klumpenaar; Tarang Jatkar; Ralph J Zottola; William G Adams; Aaron H Abend
Journal:  AMIA Annu Symp Proc       Date:  2010-11-13

6.  Use of standard drug vocabularies in clinical research: a case study in pediatrics.

Authors:  Jyotishman Pathak; Rachel L Richesson
Journal:  AMIA Annu Symp Proc       Date:  2010-11-13

7.  History of the Rochester Epidemiology Project.

Authors:  L J Melton
Journal:  Mayo Clin Proc       Date:  1996-03       Impact factor: 7.616

8.  Use of a medical records linkage system to enumerate a dynamic population over time: the Rochester epidemiology project.

Authors:  Jennifer L St Sauver; Brandon R Grossardt; Barbara P Yawn; L Joseph Melton; Walter A Rocca
Journal:  Am J Epidemiol       Date:  2011-03-23       Impact factor: 4.897

9.  Exchange of computable patient data between the Department of Veterans Affairs (VA) and the Department of Defense (DoD): terminology mediation strategy.

Authors:  Omar Bouhaddou; Pradnya Warnekar; Fola Parrish; Nhan Do; Jack Mandel; John Kilbourne; Michael J Lincoln
Journal:  J Am Med Inform Assoc       Date:  2007-12-20       Impact factor: 4.497

10.  VA National Drug File Reference Terminology: a cross-institutional content coverage study.

Authors:  Steven H Brown; Peter L Elkin; S Trent Rosenbloom; Casey Husser; Brent A Bauer; Michael J Lincoln; John Carter; Mark Erlbaum; Mark S Tuttle
Journal:  Stud Health Technol Inform       Date:  2004
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  27 in total

Review 1.  Medication-indication knowledge bases: a systematic review and critical appraisal.

Authors:  Hojjat Salmasian; Tran H Tran; Herbert S Chase; Carol Friedman
Journal:  J Am Med Inform Assoc       Date:  2015-09-02       Impact factor: 4.497

2.  Secondary use of electronic medical records for clinical research: Challenges and Opportunities.

Authors:  Wen-Wai Yim; Amanda J Wheeler; Catherine Curtin; Todd H Wagner; Tina Hernandez-Boussard
Journal:  Converg Sci Phys Oncol       Date:  2018-02-12

3.  A collaborative approach to developing an electronic health record phenotyping algorithm for drug-induced liver injury.

Authors:  Casey Lynnette Overby; Jyotishman Pathak; Omri Gottesman; Krystl Haerian; Adler Perotte; Sean Murphy; Kevin Bruce; Stephanie Johnson; Jayant Talwalkar; Yufeng Shen; Steve Ellis; Iftikhar Kullo; Christopher Chute; Carol Friedman; Erwin Bottinger; George Hripcsak; Chunhua Weng
Journal:  J Am Med Inform Assoc       Date:  2013-07-09       Impact factor: 4.497

4.  Evaluation of RxNorm for Medication Clinical Decision Support.

Authors:  Robert R Freimuth; Kelly Wix; Qian Zhu; Mark Siska; Christopher G Chute
Journal:  AMIA Annu Symp Proc       Date:  2014-11-14

5.  Cohort Profile: The Right Drug, Right Dose, Right Time: Using Genomic Data to Individualize Treatment Protocol (RIGHT Protocol).

Authors:  Suzette J Bielinski; Jennifer L St Sauver; Janet E Olson; Nicholas B Larson; John L Black; Steven E Scherer; Matthew E Bernard; Eric Boerwinkle; Bijan J Borah; Pedro J Caraballo; Timothy B Curry; HarshaVardhan Doddapaneni; Christine M Formea; Robert R Freimuth; Richard A Gibbs; Jyothsna Giri; Matthew A Hathcock; Jianhong Hu; Debra J Jacobson; Leila A Jones; Sara Kalla; Tyler H Koep; Viktoriya Korchina; Christie L Kovar; Sandra Lee; Hongfang Liu; Eric T Matey; Michaela E McGree; Tammy M McAllister; Ann M Moyer; Donna M Muzny; Wayne T Nicholson; Lance J Oyen; Xiang Qin; Ritika Raj; Véronique L Roger; Carolyn R Rohrer Vitek; Jason L Ross; Richard R Sharp; Paul Y Takahashi; Eric Venner; Kimberly Walker; Liwei Wang; Qiaoyan Wang; Jessica A Wright; Tsung-Jung Wu; Liewei Wang; Richard M Weinshilboum
Journal:  Int J Epidemiol       Date:  2020-02-01       Impact factor: 7.196

6.  Selective serotonin reuptake inhibitor use and increased risk of cataract surgery: a population-based, case-control study.

Authors:  Jay C Erie; Scott M Brue; Alanna M Chamberlain; David O Hodge
Journal:  Am J Ophthalmol       Date:  2014-03-14       Impact factor: 5.258

7.  Using EHR-Linked Biobank Data to Study Metformin Pharmacogenomics.

Authors:  Matthew K Breitenstein; Gyorgy Simon; Euijung Ryu; Sebastian M Armasu; Richard M Weinshilboum; Liewei Wang; Jyotishman Pathak
Journal:  Stud Health Technol Inform       Date:  2015

8.  Drug-drug Interaction Discovery Using Abstraction Networks for "National Drug File - Reference Terminology" Chemical Ingredients.

Authors:  Christopher Ochs; Ling Zheng; Huanying Gu; Yehoshua Perl; James Geller; Joan Kapusnik-Uner; Aleksandr Zakharchenko
Journal:  AMIA Annu Symp Proc       Date:  2015-11-05

Review 9.  Natural language processing systems for capturing and standardizing unstructured clinical information: A systematic review.

Authors:  Kory Kreimeyer; Matthew Foster; Abhishek Pandey; Nina Arya; Gwendolyn Halford; Sandra F Jones; Richard Forshee; Mark Walderhaug; Taxiarchis Botsis
Journal:  J Biomed Inform       Date:  2017-07-17       Impact factor: 6.317

10.  Quality assurance of chemical ingredient classification for the National Drug File - Reference Terminology.

Authors:  Ling Zheng; Hasan Yumak; Ling Chen; Christopher Ochs; James Geller; Joan Kapusnik-Uner; Yehoshua Perl
Journal:  J Biomed Inform       Date:  2017-07-16       Impact factor: 6.317

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