Literature DB >> 26942233

Progressive Label Fusion Framework for Multi-atlas Segmentation by Dictionary Evolution.

Yantao Song1, Guorong Wu2, Quansen Sun3, Khosro Bahrami2, Chunming Li4, Dinggang Shen2.   

Abstract

Accurate segmentation of anatomical structures in medical images is very important in neuroscience studies. Recently, multi-atlas patch-based label fusion methods have achieved many successes, which generally represent each target patch from an atlas patch dictionary in the image domain and then predict the latent label by directly applying the estimated representation coefficients in the label domain. However, due to the large gap between these two domains, the estimated representation coefficients in the image domain may not stay optimal for the label fusion. To overcome this dilemma, we propose a novel label fusion framework to make the weighting coefficients eventually to be optimal for the label fusion by progressively constructing a dynamic dictionary in a layer-by-layer manner, where a sequence of intermediate patch dictionaries gradually encode the transition from the patch representation coefficients in image domain to the optimal weights for label fusion. Our proposed framework is general to augment the label fusion performance of the current state-of-the-art methods. In our experiments, we apply our proposed method to hippocampus segmentation on ADNI dataset and achieve more accurate labeling results, compared to the counterpart methods with single-layer dictionary.

Entities:  

Year:  2015        PMID: 26942233      PMCID: PMC4773029          DOI: 10.1007/978-3-319-24574-4_23

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  8 in total

1.  Patch-based segmentation using expert priors: application to hippocampus and ventricle segmentation.

Authors:  Pierrick Coupé; José V Manjón; Vladimir Fonov; Jens Pruessner; Montserrat Robles; D Louis Collins
Journal:  Neuroimage       Date:  2010-09-17       Impact factor: 6.556

2.  Auto-context and its application to high-level vision tasks and 3D brain image segmentation.

Authors:  Zhuowen Tu; Xiang Bai
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2010-10       Impact factor: 6.226

Review 3.  Advances in functional and structural MR image analysis and implementation as FSL.

Authors:  Stephen M Smith; Mark Jenkinson; Mark W Woolrich; Christian F Beckmann; Timothy E J Behrens; Heidi Johansen-Berg; Peter R Bannister; Marilena De Luca; Ivana Drobnjak; David E Flitney; Rami K Niazy; James Saunders; John Vickers; Yongyue Zhang; Nicola De Stefano; J Michael Brady; Paul M Matthews
Journal:  Neuroimage       Date:  2004       Impact factor: 6.556

4.  Diffeomorphic demons: efficient non-parametric image registration.

Authors:  Tom Vercauteren; Xavier Pennec; Aymeric Perchant; Nicholas Ayache
Journal:  Neuroimage       Date:  2008-11-07       Impact factor: 6.556

5.  A supervised patch-based approach for human brain labeling.

Authors:  Françcois Rousseau; Piotr A Habas; Colin Studholme
Journal:  IEEE Trans Med Imaging       Date:  2011-05-19       Impact factor: 10.048

6.  A generative probability model of joint label fusion for multi-atlas based brain segmentation.

Authors:  Guorong Wu; Qian Wang; Daoqiang Zhang; Feiping Nie; Heng Huang; Dinggang Shen
Journal:  Med Image Anal       Date:  2013-11-16       Impact factor: 8.545

7.  Multi-Atlas Segmentation with Joint Label Fusion.

Authors:  Hongzhi Wang; Jung W Suh; Sandhitsu R Das; John B Pluta; Caryne Craige; Paul A Yushkevich
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2012-06-26       Impact factor: 6.226

8.  Segmentation of MR images via discriminative dictionary learning and sparse coding: application to hippocampus labeling.

Authors:  Tong Tong; Robin Wolz; Pierrick Coupé; Joseph V Hajnal; Daniel Rueckert
Journal:  Neuroimage       Date:  2013-03-21       Impact factor: 6.556

  8 in total
  2 in total

1.  Progressive multi-atlas label fusion by dictionary evolution.

Authors:  Yantao Song; Guorong Wu; Khosro Bahrami; Quansen Sun; Dinggang Shen
Journal:  Med Image Anal       Date:  2016-11-24       Impact factor: 8.545

2.  Consistent Multi-Atlas Hippocampus Segmentation for Longitudinal MR Brain Images with Temporal Sparse Representation.

Authors:  Lin Wang; Yanrong Guo; Xiaohuan Cao; Guorong Wu; Dinggang Shen
Journal:  Patch Based Tech Med Imaging (2016)       Date:  2016-09-22
  2 in total

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