| Literature DB >> 26936597 |
Daniel S Perrien1,2,3, Mohamed A Saleh4,5, Keiko Takahashi6,7, Meena S Madhur8, David G Harrison9, Raymond C Harris10,11, Takamune Takahashi12,13.
Abstract
BACKGROUND: Two-dimensional measures of vascular architecture provide incomplete information about vascular structure. This study applied a novel rigorous method for 3D microCT-based analysis of total and cortical renal vasculature combined with a novel method to isolate and quantify the number of perfused glomeruli to assess vascular changes in eNOS-/- mice.Entities:
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Year: 2016 PMID: 26936597 PMCID: PMC4776352 DOI: 10.1186/s12882-016-0235-5
Source DB: PubMed Journal: BMC Nephrol ISSN: 1471-2369 Impact factor: 2.388
Fig. 1Workflow for defining and analyzing total and cortical renal vasculature and glomeruli by contrast enhanced microCT. a The total renal volume was defined using a single contour around outer edge of the kidney. b The resulting mask was applied in combination with a grey-scale threshold and three-dimensional Gaussian noise filter to segment perfused vasculature from the total volume and (c) the distance transformation method was used to calculate thickness. d A mask approximating the renal cortex was created using a computer generated second contour, 600 μm deeper than outer contour (a) to exclude the medullary volume from the analysis. e and f The same threshold, Gaussian noise filter, and distance transformation procedures as in b and c were then applied. g Glomerular structures were then isolated from the three-dimensional segmented cortical vascular image (e) using an additional series of transformations to yield an object from which glomerular number and density can be calculated
Fig. 2Workflow for isolation of glomeruli from other vascular structures in the renal cortex. A series of erosion, dilation, and component labeling and extraction procedures were used to separate perfused glomeruli from afferent and efferent vasculature. Representative images from each step are shown as both 2-dimensional single slide cross sections (top) and anterior views of a portion of the 3-dimensional objects (bottom). Beginning with the binarized 3-dimensional representation of the cortical vasculature (a), three voxels (15 μm) were removed from all surfaces in a 3-dimensional manner using an erosion function resulting in the complete removal of any parts of the object with thickness ≤30 μm, effectively removing any detected capillaries or arterioles connected to the glomeruli (b). c The original thickness of the now eroded vascular components (b) was restored by applying a 3-dimensional dilation of 3 voxels. d All individual, disconnected, components of the image in (c) were labeled according to the total number of voxels in each object. All objects <45 or >1000 total voxels were removed from the image. The total number of objects remaining, representing the glomeruli, was quantified
Fig. 3Three-dimensional morphometric analysis of vascular volume and structure in the whole kidney reveals specific deficiencies in the vascular structure of eNOS-/- mice. Representative images of the total perfused renal vasculature illustrate the perfusion deficiency the cortex and smaller vessels in mice eNOS-/- mice (b and d) compared to WT mice (a and c). Three-dimensional quantification revealed the deletion of eNOS did not alter (e) the total kidney volume or (f) the total vascular volume. However, (g) the vascular volume/total kidney volume and (h) the vascular number in eNOS-/- kidneys was significantly lower than in WT kidneys. i Histograms illustrating the total vascular volume at each possible thickness were created and the total volume of perfused vessels at each given thickness was compared between genotypes. This analysis demonstrated a deficit in the number of perfused vessels in the range of 20–80 μm in thickness in the eNOS-/- kidneys compared to WT. All data are mean ± SEM. *p < 0.05 vs. Wildtype by Student’s t-test
Fig. 4eNOS-/- mice have less perfusable vessels in the renal cortex. Representative images of the renal vasculature in the renal cortex illustrate the perfusion deficiency eNOS-/- mice (b and d) compared to WT mice (a and c). Three-dimensional quantification revealed the deletion of eNOS did not alter (e) the total cortical volume. However, (f) the cortical vascular volume, (g) the cortical vascular volume/cortical volume and (h) the cortical vascular number in eNOS-/- kidneys was significantly lower than in WT kidneys. i Conversely, vessel separation (the mean distance between vessels) was significantly greater in the cortex of eNOS-/- mice. j Histograms illustrating the cortical vascular volume at each possible thickness were created and the total volume of perfused vessels at each given thickness was compared between genotypes. This analysis demonstrated a deficit in the number of perfused vessels in the range of 20–40 μm in thickness in the eNOS-/- renal cortex compared to WT. All data are mean ± SEM. *p < 0.05 vs. Wildtype by Student’s t-test
Fig. 5eNOS-/- mice have dramatically fewer perfusable glomeruli. Volumetric quantification of the total number of perfused glomeruli in the renal cortical volumes of interest revealed a dramatic decrease in perfused glomeruli in eNOS-/- mice compare to Wildtype (WT) which could be appreciated both visually (a and b) and quantitatively (c). Data are mean ± SEM. *p < 0.05 vs. Wildtype by Student’s t-test