Literature DB >> 26934589

Structural mechanisms of plant glucan phosphatases in starch metabolism.

David A Meekins1,2, Craig W Vander Kooi1, Matthew S Gentry1.   

Abstract

Glucan phosphatases are a recently discovered class of enzymes that dephosphorylate starch and glycogen, thereby regulating energy metabolism. Plant genomes encode two glucan phosphatases, called Starch EXcess4 (SEX4) and Like Sex Four2 (LSF2), that regulate starch metabolism by selectively dephosphorylating glucose moieties within starch glucan chains. Recently, the structures of both SEX4 and LSF2 were determined, with and without phosphoglucan products bound, revealing the mechanism for their unique activities. This review explores the structural and enzymatic features of the plant glucan phosphatases, and outlines how they are uniquely adapted to perform their cellular functions. We outline the physical mechanisms used by SEX4 and LSF2 to interact with starch glucans: SEX4 binds glucan chains via a continuous glucan-binding platform comprising its dual-specificity phosphatase domain and carbohydrate-binding module, while LSF2 utilizes surface binding sites. SEX4 and LSF2 both contain a unique network of aromatic residues in their catalytic dual-specificity phosphatase domains that serve as glucan engagement platforms and are unique to the glucan phosphatases. We also discuss the phosphoglucan substrate specificities inherent to SEX4 and LSF2, and outline structural features within the active site that govern glucan orientation. This review defines the structural mechanism of the plant glucan phosphatases with respect to phosphatases, starch metabolism and protein-glucan interaction, thereby providing a framework for their application in both agricultural and industrial settings.
© 2016 Federation of European Biochemical Societies.

Entities:  

Keywords:  Arabidopsis; dual-specificity phosphatase; enzyme specificity; glucan interactions; glucan phosphatase; phosphatase; protein tyrosine phosphatase; reversible phosphorylation; starch; structural biology

Mesh:

Substances:

Year:  2016        PMID: 26934589      PMCID: PMC4935604          DOI: 10.1111/febs.13703

Source DB:  PubMed          Journal:  FEBS J        ISSN: 1742-464X            Impact factor:   5.542


  93 in total

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Authors:  Oliver Kötting; Kerstin Pusch; Axel Tiessen; Peter Geigenberger; Martin Steup; Gerhard Ritte
Journal:  Plant Physiol       Date:  2004-12-23       Impact factor: 8.340

2.  Structure of human dual-specificity phosphatase 27 at 2.38 Å resolution.

Authors:  George T Lountos; Joseph E Tropea; David S Waugh
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-04-16

3.  Structural and functional analysis of PTPMT1, a phosphatase required for cardiolipin synthesis.

Authors:  Junyu Xiao; James L Engel; Ji Zhang; Mark J Chen; Gerard Manning; Jack E Dixon
Journal:  Proc Natl Acad Sci U S A       Date:  2011-07-05       Impact factor: 11.205

4.  Structural basis for the glucan phosphatase activity of Starch Excess4.

Authors:  Craig W Vander Kooi; Adam O Taylor; Rachel M Pace; David A Meekins; Hou-Fu Guo; Youngjun Kim; Matthew S Gentry
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-02       Impact factor: 11.205

Review 5.  Laforin, a protein with many faces: glucan phosphatase, adapter protein, et alii.

Authors:  Matthew S Gentry; Carlos Romá-Mateo; Pascual Sanz
Journal:  FEBS J       Date:  2012-03-16       Impact factor: 5.542

6.  Structural basis of plasticity in protein tyrosine phosphatase 1B substrate recognition.

Authors:  M Sarmiento; Y A Puius; S W Vetter; Y F Keng; L Wu; Y Zhao; D S Lawrence; S C Almo; Z Y Zhang
Journal:  Biochemistry       Date:  2000-07-18       Impact factor: 3.162

7.  Oligosaccharide binding to barley alpha-amylase 1.

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8.  STARCH-EXCESS4 is a laforin-like Phosphoglucan phosphatase required for starch degradation in Arabidopsis thaliana.

Authors:  Oliver Kötting; Diana Santelia; Christoph Edner; Simona Eicke; Tina Marthaler; Matthew S Gentry; Sylviane Comparot-Moss; Jychian Chen; Alison M Smith; Martin Steup; Gerhard Ritte; Samuel C Zeeman
Journal:  Plant Cell       Date:  2009-01-13       Impact factor: 11.277

9.  The two plastidial starch-related dikinases sequentially phosphorylate glucosyl residues at the surface of both the A- and B-type allomorphs of crystallized maltodextrins but the mode of action differs.

Authors:  Mahdi Hejazi; Joerg Fettke; Oskar Paris; Martin Steup
Journal:  Plant Physiol       Date:  2009-04-24       Impact factor: 8.340

10.  Glucan, Water Dikinase Exerts Little Control over Starch Degradation in Arabidopsis Leaves at Night.

Authors:  Alastair W Skeffington; Alexander Graf; Zane Duxbury; Wilhelm Gruissem; Alison M Smith
Journal:  Plant Physiol       Date:  2014-04-29       Impact factor: 8.340

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Journal:  Metabolomics       Date:  2018-10-04       Impact factor: 4.290

Review 2.  Structural biology of glucan phosphatases from humans to plants.

Authors:  Matthew S Gentry; M Kathryn Brewer; Craig W Vander Kooi
Journal:  Curr Opin Struct Biol       Date:  2016-08-04       Impact factor: 6.809

3.  Mining for protein S-sulfenylation in Arabidopsis uncovers redox-sensitive sites.

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Journal:  Proc Natl Acad Sci U S A       Date:  2019-10-02       Impact factor: 11.205

4.  Oligomerization and carbohydrate binding of glucan phosphatases.

Authors:  Savita Sharma; Carl D Vander Kooi; Matthew S Gentry; Craig W Vander Kooi
Journal:  Anal Biochem       Date:  2018-10-03       Impact factor: 3.365

Review 5.  Brain Glycogen Structure and Its Associated Proteins: Past, Present and Future.

Authors:  M Kathryn Brewer; Matthew S Gentry
Journal:  Adv Neurobiol       Date:  2019

6.  Generation and characterization of a laforin nanobody inhibitor.

Authors:  Zoe R Simmons; Savita Sharma; Jeremiah Wayne; Sheng Li; Craig W Vander Kooi; Matthew S Gentry
Journal:  Clin Biochem       Date:  2021-04-05       Impact factor: 3.625

7.  An empirical pipeline for personalized diagnosis of Lafora disease mutations.

Authors:  M Kathryn Brewer; Maria Machio-Castello; Rosa Viana; Jeremiah L Wayne; Andrea Kuchtová; Zoe R Simmons; Sarah Sternbach; Sheng Li; Maria Adelaida García-Gimeno; Jose M Serratosa; Pascual Sanz; Craig W Vander Kooi; Matthew S Gentry
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