Literature DB >> 26929361

Insights into global diatom distribution and diversity in the world's ocean.

Shruti Malviya1, Eleonora Scalco2, Stéphane Audic3, Flora Vincent1, Alaguraj Veluchamy1, Julie Poulain4, Patrick Wincker5, Daniele Iudicone2, Colomban de Vargas3, Lucie Bittner1, Adriana Zingone2, Chris Bowler6.   

Abstract

Diatoms (Bacillariophyta) constitute one of the most diverse and ecologically important groups of phytoplankton. They are considered to be particularly important in nutrient-rich coastal ecosystems and at high latitudes, but considerably less so in the oligotrophic open ocean. The Tara Oceans circumnavigation collected samples from a wide range of oceanic regions using a standardized sampling procedure. Here, a total of ∼12 million diatom V9-18S ribosomal DNA (rDNA) ribotypes, derived from 293 size-fractionated plankton communities collected at 46 sampling sites across the global ocean euphotic zone, have been analyzed to explore diatom global diversity and community composition. We provide a new estimate of diversity of marine planktonic diatoms at 4,748 operational taxonomic units (OTUs). Based on the total assigned ribotypes, Chaetoceros was the most abundant and diverse genus, followed by Fragilariopsis, Thalassiosira, and Corethron We found only a few cosmopolitan ribotypes displaying an even distribution across stations and high abundance, many of which could not be assigned with confidence to any known genus. Three distinct communities from South Pacific, Mediterranean, and Southern Ocean waters were identified that share a substantial percentage of ribotypes within them. Sudden drops in diversity were observed at Cape Agulhas, which separates the Indian and Atlantic Oceans, and across the Drake Passage between the Atlantic and Southern Oceans, indicating the importance of these ocean circulation choke points in constraining diatom distribution and diversity. We also observed high diatom diversity in the open ocean, suggesting that diatoms may be more relevant in these oceanic systems than generally considered.

Entities:  

Keywords:  Tara Oceans; biodiversity; choke points; diatoms; metabarcoding

Mesh:

Substances:

Year:  2016        PMID: 26929361      PMCID: PMC4801293          DOI: 10.1073/pnas.1509523113

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  36 in total

1.  Global patterns and predictors of marine biodiversity across taxa.

Authors:  Derek P Tittensor; Camilo Mora; Walter Jetz; Heike K Lotze; Daniel Ricard; Edward Vanden Berghe; Boris Worm
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2.  The perils of DNA barcoding and the need for integrative taxonomy.

Authors:  Kipling W Will; Brent D Mishler; Quentin D Wheeler
Journal:  Syst Biol       Date:  2005-10       Impact factor: 15.683

Review 3.  If everything is everywhere, do they share a common gene pool?

Authors:  Linda K Medlin
Journal:  Gene       Date:  2007-09-19       Impact factor: 3.688

4.  An inordinate fondness? The number, distributions, and origins of diatom species.

Authors:  David G Mann; Pieter Vanormelingen
Journal:  J Eukaryot Microbiol       Date:  2013-05-27       Impact factor: 3.346

5.  A latitudinal diversity gradient in planktonic marine bacteria.

Authors:  Jed A Fuhrman; Joshua A Steele; Ian Hewson; Michael S Schwalbach; Mark V Brown; Jessica L Green; James H Brown
Journal:  Proc Natl Acad Sci U S A       Date:  2008-05-28       Impact factor: 11.205

6.  Making sense of ocean biota: how evolution and biodiversity of land organisms differ from that of the plankton.

Authors:  Victor Smetacek
Journal:  J Biosci       Date:  2012-09       Impact factor: 1.826

7.  HOW MANY SPECIES OF ALGAE ARE THERE?

Authors:  Michael D Guiry
Journal:  J Phycol       Date:  2012-09-20       Impact factor: 2.923

8.  Development of a real-time PCR assay for rapid detection and quantification of Alexandrium minutum (a Dinoflagellate).

Authors:  Luca Galluzzi; Antonella Penna; Elena Bertozzini; Magda Vila; Esther Garcés; Mauro Magnani
Journal:  Appl Environ Microbiol       Date:  2004-02       Impact factor: 4.792

9.  Contrasting seasonal niche separation between rare and abundant taxa conceals the extent of protist diversity.

Authors:  Viola Nolte; Ram Vinay Pandey; Steffen Jost; Ralph Medinger; Birgit Ottenwälder; Jens Boenigk; Christian Schlötterer
Journal:  Mol Ecol       Date:  2010-07-01       Impact factor: 6.185

10.  Swarm: robust and fast clustering method for amplicon-based studies.

Authors:  Frédéric Mahé; Torbjørn Rognes; Christopher Quince; Colomban de Vargas; Micah Dunthorn
Journal:  PeerJ       Date:  2014-09-25       Impact factor: 2.984

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  98 in total

1.  Light-dependent single-cell heterogeneity in the chloroplast redox state regulates cell fate in a marine diatom.

Authors:  Avia Mizrachi; Shiri Graff van Creveld; Orr H Shapiro; Shilo Rosenwasser; Assaf Vardi
Journal:  Elife       Date:  2019-06-24       Impact factor: 8.140

Review 2.  Biological aspects and biotechnological potential of marine diatoms in relation to different light regimens.

Authors:  Costanza Baldisserotto; Alessandra Sabia; Lorenzo Ferroni; Simonetta Pancaldi
Journal:  World J Microbiol Biotechnol       Date:  2019-02-02       Impact factor: 3.312

3.  Different iron storage strategies among bloom-forming diatoms.

Authors:  Robert H Lampe; Elizabeth L Mann; Natalie R Cohen; Claire P Till; Kimberlee Thamatrakoln; Mark A Brzezinski; Kenneth W Bruland; Benjamin S Twining; Adrian Marchetti
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-11       Impact factor: 11.205

Review 4.  Human Health and Ocean Pollution.

Authors:  Philip J Landrigan; John J Stegeman; Lora E Fleming; Denis Allemand; Donald M Anderson; Lorraine C Backer; Françoise Brucker-Davis; Nicolas Chevalier; Lilian Corra; Dorota Czerucka; Marie-Yasmine Dechraoui Bottein; Barbara Demeneix; Michael Depledge; Dimitri D Deheyn; Charles J Dorman; Patrick Fénichel; Samantha Fisher; Françoise Gaill; François Galgani; William H Gaze; Laura Giuliano; Philippe Grandjean; Mark E Hahn; Amro Hamdoun; Philipp Hess; Bret Judson; Amalia Laborde; Jacqueline McGlade; Jenna Mu; Adetoun Mustapha; Maria Neira; Rachel T Noble; Maria Luiza Pedrotti; Christopher Reddy; Joacim Rocklöv; Ursula M Scharler; Hariharan Shanmugam; Gabriella Taghian; Jeroen A J M van de Water; Luigi Vezzulli; Pál Weihe; Ariana Zeka; Hervé Raps; Patrick Rampal
Journal:  Ann Glob Health       Date:  2020-12-03       Impact factor: 2.462

Review 5.  The evolution of diatoms and their biogeochemical functions.

Authors:  Anne-Sophie Benoiston; Federico M Ibarbalz; Lucie Bittner; Lionel Guidi; Oliver Jahn; Stephanie Dutkiewicz; Chris Bowler
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-09-05       Impact factor: 6.237

Review 6.  The role of intraspecific variation in the ecological and evolutionary success of diatoms in changing environments.

Authors:  Anna Godhe; Tatiana Rynearson
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-09-05       Impact factor: 6.237

7.  Dynamic Changes between Two LHCX-Related Energy Quenching Sites Control Diatom Photoacclimation.

Authors:  Lucilla Taddei; Volha U Chukhutsina; Bernard Lepetit; Giulio Rocco Stella; Roberto Bassi; Herbert van Amerongen; Jean-Pierre Bouly; Marianne Jaubert; Giovanni Finazzi; Angela Falciatore
Journal:  Plant Physiol       Date:  2018-05-17       Impact factor: 8.340

8.  Insights into global planktonic diatom diversity: The importance of comparisons between phylogenetically equivalent units that account for time.

Authors:  Teofil Nakov; Jeremy M Beaulieu; Andrew J Alverson
Journal:  ISME J       Date:  2018-07-16       Impact factor: 10.302

Review 9.  Genome editing in diatoms: achievements and goals.

Authors:  Peter G Kroth; Atle M Bones; Fayza Daboussi; Maria I Ferrante; Marianne Jaubert; Misha Kolot; Marianne Nymark; Carolina Río Bártulos; Andrés Ritter; Monia T Russo; Manuel Serif; Per Winge; Angela Falciatore
Journal:  Plant Cell Rep       Date:  2018-08-23       Impact factor: 4.570

10.  Delineating ecologically significant taxonomic units from global patterns of marine picocyanobacteria.

Authors:  Gregory K Farrant; Hugo Doré; Francisco M Cornejo-Castillo; Frédéric Partensky; Morgane Ratin; Martin Ostrowski; Frances D Pitt; Patrick Wincker; David J Scanlan; Daniele Iudicone; Silvia G Acinas; Laurence Garczarek
Journal:  Proc Natl Acad Sci U S A       Date:  2016-06-02       Impact factor: 11.205

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