Literature DB >> 26904380

Adding pieces to the puzzle: New insights into bacteriophage diversity from integrated research-education programs.

Welkin H Pope1, Graham F Hatfull1.   

Abstract

Bacteriophages are the dark matter of the biological universe: the population is vast and replete with novel genes whose function is unknown. The genomic insights such as the mosaic architecture gleaned from perhaps 2,000 currently sequenced bacteriophage genomes is far from representative of the total number phage particles in the biosphere - about 10ˆ31. The recent comparative analysis of 627 mycobacteriophages isolated on Mycobacterium smegmatis mc2 155 is the most extensive examination yet in pursuit of this question.

Entities:  

Keywords:  bacteriophage; bacteriophages; comparative genomics; genome diversity; genomics; mycobacterium; phage; phages; tuberculosis; viral evolution

Year:  2015        PMID： 26904380      PMCID： PMC4743490          DOI： 10.1080/21597081.2015.1084073

Source DB:  PubMed          Journal:  Bacteriophage        ISSN： 2159-7073


  21 in total

Review 1.  Bacteriophage genomics.

Authors:  Roger W Hendrix
Journal:  Curr Opin Microbiol       Date:  2003-10       Impact factor: 7.934

Review 2.  Bacteriophages: evolution of the majority.

Authors:  Roger W Hendrix
Journal:  Theor Popul Biol       Date:  2002-06       Impact factor: 1.570

Review 3.  Viral metagenomics.

Authors:  Robert A Edwards; Forest Rohwer
Journal:  Nat Rev Microbiol       Date:  2005-06       Impact factor: 60.633

Review 4.  Marine viruses--major players in the global ecosystem.

Authors:  Curtis A Suttle
Journal:  Nat Rev Microbiol       Date:  2007-10       Impact factor: 60.633

5.  Viral tagging reveals discrete populations in Synechococcus viral genome sequence space.

Authors:  Li Deng; J Cesar Ignacio-Espinoza; Ann C Gregory; Bonnie T Poulos; Joshua S Weitz; Philip Hugenholtz; Matthew B Sullivan
Journal:  Nature       Date:  2014-07-13       Impact factor: 49.962

6.  Filamentous phage active on the gram-positive bacterium Propionibacterium freudenreichii.

Authors:  Marie-Christine Chopin; Annette Rouault; S Dusko Ehrlich; Michel Gautier
Journal:  J Bacteriol       Date:  2002-04       Impact factor: 3.490

7.  DNA sequence, structure and gene expression of mycobacteriophage L5: a phage system for mycobacterial genetics.

Authors:  G F Hatfull; G J Sarkis
Journal:  Mol Microbiol       Date:  1993-02       Impact factor: 3.501

8.  Phamerator: a bioinformatic tool for comparative bacteriophage genomics.

Authors:  Steven G Cresawn; Matt Bogel; Nathan Day; Deborah Jacobs-Sera; Roger W Hendrix; Graham F Hatfull
Journal:  BMC Bioinformatics       Date:  2011-10-12       Impact factor: 3.169

Review 9.  On the nature of mycobacteriophage diversity and host preference.

Authors:  Deborah Jacobs-Sera; Laura J Marinelli; Charles Bowman; Gregory W Broussard; Carlos Guerrero Bustamante; Michelle M Boyle; Zaritza O Petrova; Rebekah M Dedrick; Welkin H Pope; Robert L Modlin; Roger W Hendrix; Graham F Hatfull
Journal:  Virology       Date:  2012-10-22       Impact factor: 3.616

10.  Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity.

Authors:  Welkin H Pope; Charles A Bowman; Daniel A Russell; Deborah Jacobs-Sera; David J Asai; Steven G Cresawn; William R Jacobs; Roger W Hendrix; Jeffrey G Lawrence; Graham F Hatfull
Journal:  Elife       Date:  2015-04-28       Impact factor: 8.140
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  3 in total

1.  Expanding Tiny Earth to genomics: a bioinformatics approach for an undergraduate class to characterize antagonistic strains.

Authors:  Joseph Basalla; Ryan Harris; Elizabeth Burgess; Nicholas Zeedyk; Hans Wildschutte
Journal:  FEMS Microbiol Lett       Date:  2020-01-01       Impact factor: 2.742

2.  Bacteriophage-Based Biosensing of Pseudomonas aeruginosa: An Integrated Approach for the Putative Real-Time Detection of Multi-Drug-Resistant Strains.

Authors:  Liliam K Harada; Waldemar Bonventi Júnior; Erica C Silva; Thais J Oliveira; Fernanda C Moreli; José M Oliveira Júnior; Matthieu Tubino; Marta M D C Vila; Victor M Balcão
Journal:  Biosensors (Basel)       Date:  2021-04-15

3.  Apoptosis like symptoms associated with abortive infection of Mycobacterium smegmatis by mycobacteriophage D29.

Authors:  Fatema Calcuttawala; Rahul Shaw; Arpita Sarbajna; Moumita Dutta; Saptarshi Sinha; Sujoy K Das Gupta
Journal:  PLoS One       Date:  2022-05-17       Impact factor: 3.240
  3 in total

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