Literature DB >> 26904375

Transposable elements and small RNAs: Genomic fuel for species diversity.

Federico G Hoffmann1, Liam P McGuire2, Brian A Counterman3, David A Ray2.   

Abstract

While transposable elements (TE) have long been suspected of involvement in species diversification, identifying specific roles has been difficult. We recently found evidence of TE-derived regulatory RNAs in a species-rich family of bats. The TE-derived small RNAs are temporally associated with the burst of species diversification, suggesting that they may have been involved in the processes that led to the diversification. In this commentary, we expand on the ideas that were briefly touched upon in that manuscript. Specifically, we suggest avenues of research that may help to identify the roles that TEs may play in perturbing regulatory pathways. Such research endeavors may serve to inform evolutionary biologists of the ways that TEs have influenced the genomic and taxonomic diversity around us.

Keywords:  evolution; genomics; small RNAs; transposable elements

Year:  2015        PMID: 26904375      PMCID: PMC4743710          DOI: 10.1080/2159256X.2015.1066919

Source DB:  PubMed          Journal:  Mob Genet Elements        ISSN: 2159-2543


  53 in total

1.  Generation of a widespread Drosophila inversion by a transposable element.

Authors:  M Cáceres; J M Ranz; A Barbadilla; M Long; A Ruiz
Journal:  Science       Date:  1999-07-16       Impact factor: 47.728

Review 2.  It takes two transposons to tango: transposable-element-mediated chromosomal rearrangements.

Authors:  Y H Gray
Journal:  Trends Genet       Date:  2000-10       Impact factor: 11.639

Review 3.  Chromosome rearrangements and transposable elements.

Authors:  Wolf-Ekkehard Lonnig; Heinz Saedler
Journal:  Annu Rev Genet       Date:  2002-06-11       Impact factor: 16.830

4.  Comprehensive analysis of microRNA genomic loci identifies pervasive repetitive-element origins.

Authors:  Glen M Borchert; Nathaniel W Holton; Jonathan D Williams; William L Hernan; Ian P Bishop; Joel A Dembosky; James E Elste; Nathaniel S Gregoire; Jee-Ah Kim; Wesley W Koehler; Joe C Lengerich; Arianna A Medema; Marilyn A Nguyen; Geoffrey D Ower; Michelle A Rarick; Brooke N Strong; Nicholas J Tardi; Nathan M Tasker; Darren J Wozniak; Craig Gatto; Erik D Larson
Journal:  Mob Genet Elements       Date:  2011-05

Review 5.  The locus of evolution: evo devo and the genetics of adaptation.

Authors:  Hopi E Hoekstra; Jerry A Coyne
Journal:  Evolution       Date:  2007-05       Impact factor: 3.694

Review 6.  piRNA and spermatogenesis in mice.

Authors:  Shinichiro Chuma; Toru Nakano
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-01-05       Impact factor: 6.237

7.  Continuing analysis of microRNA origins: Formation from transposable element insertions and noncoding RNA mutations.

Authors:  Justin T Roberts; Elvera A Cooper; Connor J Favreau; Jacob S Howell; Lee G Lane; James E Mills; Derrick C Newman; Tabitha J Perry; Meaghan E Russell; Brittany M Wallace; Glen M Borchert
Journal:  Mob Genet Elements       Date:  2014-01-10

8.  The limited distribution of Helitrons to vesper bats supports horizontal transfer.

Authors:  Jainy Thomas; Mehran Sorourian; David Ray; Robert J Baker; Ellen J Pritham
Journal:  Gene       Date:  2010-12-28       Impact factor: 3.688

9.  Species on the menu of a generalist predator, the eastern red bat (Lasiurus borealis): using a molecular approach to detect arthropod prey.

Authors:  Elizabeth L Clare; Erin E Fraser; Heather E Braid; M Brock Fenton; Paul D N Hebert
Journal:  Mol Ecol       Date:  2009-06       Impact factor: 6.185

10.  Insectivorous bats digest chitin in the stomach using acidic mammalian chitinase.

Authors:  Sara Strobel; Anna Roswag; Nina I Becker; Tina E Trenczek; Jorge A Encarnação
Journal:  PLoS One       Date:  2013-09-03       Impact factor: 3.240

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  6 in total

1.  Helitrons in Drosophila: Chromatin modulation and tandem insertions.

Authors:  Guilherme B Dias; Pedro Heringer; Gustavo C S Kuhn
Journal:  Mob Genet Elements       Date:  2016-03-07

Review 2.  Living Organisms Author Their Read-Write Genomes in Evolution.

Authors:  James A Shapiro
Journal:  Biology (Basel)       Date:  2017-12-06

3.  Multiple and Independent Phases of Transposable Element Amplification in the Genomes of Piciformes (Woodpeckers and Allies).

Authors:  Joseph D Manthey; Robert G Moyle; Stéphane Boissinot
Journal:  Genome Biol Evol       Date:  2018-06-01       Impact factor: 3.416

4.  Comparative Population Genomics of Cryptic Speciation and Adaptive Divergence in Bicknell's and Gray-Cheeked Thrushes (Aves: Catharus bicknelli and Catharus minimus).

Authors:  Flavia Termignoni-Garcia; Jeremy J Kirchman; Johnathan Clark; Scott V Edwards
Journal:  Genome Biol Evol       Date:  2022-01-04       Impact factor: 3.416

5.  Comparative genomic analysis of the multispecies probiotic-marketed product VSL#3.

Authors:  François P Douillard; Diego Mora; Robyn T Eijlander; Michiel Wels; Willem M de Vos
Journal:  PLoS One       Date:  2018-02-16       Impact factor: 3.240

Review 6.  Chromosomal Evolution in Chiroptera.

Authors:  Cibele G Sotero-Caio; Robert J Baker; Marianne Volleth
Journal:  Genes (Basel)       Date:  2017-10-13       Impact factor: 4.096

  6 in total

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