Literature DB >> 21193022

The limited distribution of Helitrons to vesper bats supports horizontal transfer.

Jainy Thomas1, Mehran Sorourian, David Ray, Robert J Baker, Ellen J Pritham.   

Abstract

Transposable elements (TEs) have the unique ability to move and replicate within the genome and therefore engender dramatic changes to genome architecture. Among different types of TEs, rolling-circle transposons (Helitrons) are well known for their ability to capture and amplify host gene fragments. Bioinformatic analysis revealed that Helitrons constitute ~3% of the Myotis lucifugus, (little brown bat) genome, while no Helitrons were found in any of the other 44+ sequenced mammalian genomes. Recently horizontal transfer has been implicated for some of the M. lucifugus Helitrons, in part explaining this disparate distribution among mammals. The purpose of this work is to determine both the distribution of Helitrons among bats and to estimate the number of independent invasions. We employed a combination of in silico, PCR and hybridization based techniques to identify Helitrons from diverse bat species belonging to ten different families. This work reveals that Helitrons invaded the vesper bat lineage, at least once. Indeed, Helitrons were not identified in the sister taxa 'Miniopterus', which suggests that the amplification of Helibat occurred (30-36 mya) only in the vesper bat lineage. The estimated age of amplification of the Helibats and the rapid radiation of vesper bats are roughly coincidental and suggest that the invasion and amplification of these elements might have influenced their evolutionary trajectory potentially contributing to phenotypic and genotypic diversity. Published by Elsevier B.V.

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Year:  2010        PMID: 21193022     DOI: 10.1016/j.gene.2010.12.007

Source DB:  PubMed          Journal:  Gene        ISSN: 0378-1119            Impact factor:   3.688


  18 in total

1.  Transposable elements and small RNAs: Genomic fuel for species diversity.

Authors:  Federico G Hoffmann; Liam P McGuire; Brian A Counterman; David A Ray
Journal:  Mob Genet Elements       Date:  2015-07-24

2.  Conflicting Evolutionary Histories of the Mitochondrial and Nuclear Genomes in New World Myotis Bats.

Authors:  Roy N Platt; Brant C Faircloth; Kevin A M Sullivan; Troy J Kieran; Travis C Glenn; Michael W Vandewege; Thomas E Lee; Robert J Baker; Richard D Stevens; David A Ray
Journal:  Syst Biol       Date:  2018-03-01       Impact factor: 15.683

3.  Genetic diversity of neotropical Myotis (chiroptera: vespertilionidae) with an emphasis on South American species.

Authors:  Roxanne J Larsen; Michelle C Knapp; Hugh H Genoways; Faisal Ali Anwarali Khan; Peter A Larsen; Don E Wilson; Robert J Baker
Journal:  PLoS One       Date:  2012-10-03       Impact factor: 3.240

4.  Survey sequencing reveals elevated DNA transposon activity, novel elements, and variation in repetitive landscapes among vesper bats.

Authors:  Heidi J T Pagán; Jiří Macas; Petr Novák; Eve S McCulloch; Richard D Stevens; David A Ray
Journal:  Genome Biol Evol       Date:  2012-04-04       Impact factor: 3.416

5.  Targeted Capture of Phylogenetically Informative Ves SINE Insertions in Genus Myotis.

Authors:  Roy N Platt; Yuhua Zhang; David J Witherspoon; Jinchuan Xing; Alexander Suh; Megan S Keith; Lynn B Jorde; Richard D Stevens; David A Ray
Journal:  Genome Biol Evol       Date:  2015-05-25       Impact factor: 3.416

6.  Differential SINE evolution in vesper and non-vesper bats.

Authors:  David A Ray; Heidi Jt Pagan; Roy N Platt; Ashley R Kroll; Sarah Schaack; Richard D Stevens
Journal:  Mob DNA       Date:  2015-05-15

7.  DINE-1, the highest copy number repeats in Drosophila melanogaster are non-autonomous endonuclease-encoding rolling-circle transposable elements (Helentrons).

Authors:  Jainy Thomas; Komal Vadnagara; Ellen J Pritham
Journal:  Mob DNA       Date:  2014-06-04

8.  Comparative analysis of transposable elements highlights mobilome diversity and evolution in vertebrates.

Authors:  Domitille Chalopin; Magali Naville; Floriane Plard; Delphine Galiana; Jean-Nicolas Volff
Journal:  Genome Biol Evol       Date:  2015-01-09       Impact factor: 3.416

9.  ncRNAclassifier: a tool for detection and classification of transposable element sequences in RNA hairpins.

Authors:  Sébastien Tempel; Nicolas Pollet; Fariza Tahi
Journal:  BMC Bioinformatics       Date:  2012-09-25       Impact factor: 3.169

10.  Transposable elements and viruses as factors in adaptation and evolution: an expansion and strengthening of the TE-Thrust hypothesis.

Authors:  Keith R Oliver; Wayne K Greene
Journal:  Ecol Evol       Date:  2012-10-16       Impact factor: 2.912

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