| Literature DB >> 26904042 |
Yonghui Dong1, Bin Li2, Sergey Malitsky3, Ilana Rogachev3, Asaph Aharoni3, Filip Kaftan4, Aleš Svatoš4, Pietro Franceschi5.
Abstract
Mass spectrometry imaging (MSI) is a mass spectrometry based molecular ion imaging technique. It provides the means for ascertaining the spatial distribution of a large variety of analytes directly on tissue sample surfaces without any labeling or staining agents. These advantages make it an attractive molecular histology tool in medical, pharmaceutical, and biological research. Likewise, MSI has started gaining popularity in plant sciences; yet, information regarding sample preparation methods for plant tissues is still limited. Sample preparation is a crucial step that is directly associated with the quality and authenticity of the imaging results, it therefore demands in-depth studies based on the characteristics of plant samples. In this review, a sample preparation pipeline is discussed in detail and illustrated through selected practical examples. In particular, special concerns regarding sample preparation for plant imaging are critically evaluated. Finally, the applications of MSI techniques in plants are reviewed according to different classes of plant metabolites.Entities:
Keywords: DESI; MALDI; SIMS; mass spectrometry imaging; molecular histology; plant metabolites
Year: 2016 PMID: 26904042 PMCID: PMC4748743 DOI: 10.3389/fpls.2016.00060
Source DB: PubMed Journal: Front Plant Sci ISSN: 1664-462X Impact factor: 5.753
Figure 1Typical workflow of a MALDI imaging experiment.
Figure 2Adhesive film assisted CMC embedding method. (i) Freeze embedding can be achieved by either (1) freezing before embedding or (2) freezing after embedding. In freezing before embedding method: (a,b) Freezing of the sample in the coolant; (c) freeze-embedding of the frozen sample with 4–5% CMC gel; (d) completely freezing the CMC gel in coolant (i.e., hexane); (e) removing the CMC block from container;. In freezing after embedding method: (a) placing the sample into 4–5% CMC gel; (b) completely freezing the CMC gel in coolant (i.e., hexane); (c) removing the CMC block from container; (ii) After freeze embedding, the CMC block is subjected to freeze sectioning: (f) fixing the embedded sample to the sample holder with CMC gel and then attaching it to the cryomicrotome; (g) adhering the film to the exposed cutting surface; (h) cutting the sample; (i) placing sample section on the glass slide. Figure is adapted with permission from Kawamoto (2003).
Figure 3Comparison between (i) spray based (Bruker ImagePrep system) and (ii) vacuum sublimated DHB matrix in MALDI imaging. (a1) 30 gL−1 DHB (in 70% ACN solution) was used. Typical instrumental parameters include: 0.8 s spray, 10 s incubation, 70 s drying, and 60 spray cycles. (a2) 300 mg DHB was used. Major parameters include: ~120°C heating temperature, 0.05 Torr vacuum pressure, 10–11 min sublimation, matrix density 0.05 mgcm−2. (b1,b2): DHB crystal sizes resulting from Bruker ImagePrep (b1) and sublimation (b2), scale bar: 10 μm. Figures were adapted with the permission from Ref. (Hankin et al., 2007; Franceschi et al., 2012).
Figure 4MS imaging of metabolites below the cuticle. (i) MALDI imaging of Arabidopsis leaf. The left area of the leaf was grasped using forceps, the middle part remained un-treated and the right area was chloroform-dipped (b); Kaempferol (a) and Kaempferol Rhamnoside (d) were readily detected in the forceps- grasped and chloroform-dipped areas, while C26 (c) and C30 (f) fatty acids were washed off in the chloroform-dipped area. An un-identified analyte m/z = 210 (d) showed high abundance in the chloroform-dipped area. (ii) DESI images of the hydroxynitrile glucosides of m∕z = 276 (b), 298 (c) and 300 (d) from barley leaf epidermis. The leaf abaxial epidermis strip was physically peeled off (a). (iii) Comparison of imprinting and direct DESI imaging of L. japonicus leaves. (A) Indirect DESI imaging of the leaf imprint on Teflon. (B) Direct DESI imaging of the leaf, with chloroform, methanol and water (1:1:0.4, v/v/v) as spray solvent. (a) Optical image of L. japonicus leaves. (a1) Optical image of the leaf imprints on Teflon. (b–e) DESI images of m/z 104, 286, 298, and 300, respectively. Figures were adapted with the permission from Cha et al. (2008), Li et al. (2011, 2013), and Bjarnholt et al. (2014), respectively.
Selected examples of studies in which MSI was used to detect different classes of plant metabolites.
| Carbohydrates | MALDI (+) | CHCA (in MeOH:H2O, 1:1, + 0.1% FA) | Wheat stem | Oligosaccharides | • Cryosecting (−20°C, 50 μm) and hand sectioning | Robinson et al., |
| MALDI (+) | DHB, CHCA, SA 20 mg/ml (ACN:H2O, 1:1, +0.1% TFA) | Poplar stem | Cellulose | • Cryosecting (−8°C, 50 μm) | Jung et al., | |
| MALDI (+) | DHB, 25 mg/ml (in 0.05 mM aqueous sodium acetate) | Poplar stem | Cellulose | • Microtome sectioning (room temperature, 50 μm) | Lunsford et al., | |
| MALDI (+) | DHB/DMA, 100 mg/ml (in H2O/ACN/ DMA, 1:1:0.02) | Wheat grain | β-glucan | • Vibratome sectioning (in 70% ethanol, 60 μm;) | Veličković et al., | |
| IR-MALDI (+) | Native water in the samples | Strawberry | Fructose/glucose | • Hand cutting (room temperature, 0.2–0.5 mm) | Li et al., | |
| Organic acids | GALDI (−) | Colloidal graphite (in 2-propanol) | Apple; Strawberry | Malic acid | • Cryosecting (liquid nitrogen pre-treated) | Zhang et al., |
| DESI (−) | ACN:H2O (4:1) | Grape leaf petiole | Tartaric acid | • Hand cutting (room temperature, 0.3 mm) | Dong et al., | |
| Lipids and Fatty acids | MALDI (±) | DHB, 50 mg/ml (in MeOH:H2O, 7:3) | Black rice seed | Lysophosphatidylcholine, phosphatidylcholine, Phytic acid gamma-Oryzanol ahpha-Tocopherol | • Cryosecting (-80°C frozen section and freeze imbedded section with 2% CMC at -80°C, 8 μm) | Zaima et al., |
| MALDI (+) | DHB | Cotton seed | Phosphatidylcholines, triacylglycerols, phospholipids | • Cryosecting (unfixed and paraformaldehyde fixed sections, 20°C, 30 μm) | Horn et al., | |
| MALDI (−) | DAN | Maize leaf | Glycerolipids | • Cryosecting (freeze imbedded section with gelatin, 10 μm) | Korte et al., | |
| LDI (+) | Colloidal silver | Epicuticular wax | • Vacuum dried (~50 Torr, 30–60 min) | Cha et al., | ||
| MALDI (+) | Lithium-DHB, 20mg/ml (in acetone: dichloromethane, 9:1) | Wax esters | • Desiccator dried samples | Vrkoslav et al., | ||
| Proteins and Peptides | MALDI (+) | Sinapic acid | Soybean | Proteins | • Cryosectioning (10–15 μm) | Grassl et al., |
| MALDI (+) | Unknown | Barley grain | Proteins | • Unknown | Kaspar et al., | |
| MALDI (+) | 10 g/L CHCA: 10 g/LAniline (in ACN:H2O:TFA, 50:50:0.1) | Tomato fruit | Protein | • Cryosectioning (5% CMC embedding, 50 μm) | Bencivenni et al., | |
| Terpenoids | LDI (−) | Hypericum leaf, placenta, stamen and stylus | Naphthodianthrones | • Fresh sample or Cryosectioning (60 μm) | Holscher et al., | |
| DESI (−) | MeOH:H2O, 1:1, +1% ammonium | Hypericum | Hyperforin | • Imprinting on porous Teflon | Thunig et al., | |
| DESI (−) | 100 uM NH4Cl in MeOH | Red alga | Bromophycolide A and B | • Preserved with 10% formalin in seawater and kept moist with seawater | Lane et al., | |
| Alkaloids | MALDI (+) | Saturated CHCA (in methanol) | Capsicum fruit | Capsaicin | • Cryosectioning (−20°C, 70 μm) | Taira et al., |
| DESI (−) | MeOH:H2O, 9:1 | Malabaricone C | • Imprinting on a printer paper | Ifa et al., | ||
| MALDI (+) | DHB, 30 mg/ml (in MeOH:H2O, 1:1+1%TFA) | Fruiting bodies of | 6-Hydroxymetatacarboline D | • Freeze-dried | Jaeger et al., | |
| LDI (−) | Tomato leaf | Tomatine | • Imprinting on pencil-lead-coated glass | Li et al., | ||
| Glycosides | MALDI (−) | 9-aminoacridine 15 mg/ml (MeOH) | Glucosinolates | • Fresh sample | Shroff et al., | |
| MALDI (−) | 9-aminoacridine (neat) | Glucosinolates | • Fresh sample | Shroff et al., | ||
| DESI (+) | MeOH:H2O, 4:1 | Cassava tubers | Gyanogenic glycosides | • Cryosectioning (50 μm) | Li et al., | |
| Phenolics | MALDI (+) | DHB, 50 mg/mL (in MeOH:H2O, 7:3) | Rabbiteye blueberry | Anthocyanins | • Cryosectioning (50 μm) | Yoshimura et al., |
| MALDI (+) | DHB, 50 mg/mL (in MeOH:H2O, 7:3) | Black rice seed | Anthocyanins | • Cryosectioning (freeze-embedded with 2% CMC at −80°C, 10 μm) | Yoshimura et al., | |
| GALDI (−) | Colloidal graphite (in 2-propanol) | Flavonoids | • Vacuum dried (for leaf and flower, ~50 Torr, 30 min) and cryosectioning (for stem) | Cha et al., | ||
| SIMS (Bi3+ ion beam) | Pea seed; | Flavonoids | • Cryostat sectioning (−20°C, 12 μm) for pea seed | Seyer et al., | ||
| Element | LA-ICP | K, P, Mg, Mn, | • Fresh sample | Becker et al., | ||
| Nano-SIMS (Cs+ ion beam) | Rice node, internode and leaf sheath | 12C14N−, 28Si−, 56Fe16O−, 75As−, 32S−, 63Cu−, 31P−, 64Zn16O− | • Samples were coated with 5 nm of platinum | Moore et al., | ||
| SIMS (gallium ion beam) | Wheat grain | O−, | • Ultramicrotome sectioning (polyester resin embedding) | Heard et al., |
DMA, N,N-Dimethylaniline; SA, sinapinic acid; DAN, 1,5-Diaminonaphthalene; CAN, acetonitrile; MeOH, methanol; MALDI, matrix assisted laser desorption ionization; LDI, laser desorption ionization; GALDI, graphite assisted laser desorption ionization; DESI, desorption electrospray ionization; SIMS, secondary ion mass spectrometry; LA-ICP, laser ablation inductively coupled plasma.
Red alga Callophycus serratus and M. metata are not classified as plant.