Literature DB >> 31112181

Droplet probe: coupling chromatography to the in situ evaluation of the chemistry of nature.

Nicholas H Oberlies1, Sonja L Knowles1, Chiraz Soumia M Amrine1, Diana Kao1, Vilmos Kertesz2, Huzefa A Raja1.   

Abstract

Covering: up to 2019The chemistry of nature can be beautiful, inspiring, beneficial and poisonous, depending on perspective. Since the isolation of the first secondary metabolites roughly two centuries ago, much of the chemical research on natural products has been both reductionist and static. Typically, compounds were isolated and characterized from the extract of an entire organism from a single time point. While there could be subtexts to that approach, the general premise has been to determine the chemistry with very little in the way of tools to differentiate spatial and/or temporal changes in secondary metabolite profiles. However, the past decade has seen exponential advances in our ability to observe, measure, and visualize the chemistry of nature in situ. Many of those techniques have been reviewed in this journal, and most are tapping into the power of mass spectrometry to analyze a plethora of sample types. In nearly all of the other techniques used to study chemistry in situ, the element of chromatography has been eliminated, instead using various ionization sources to coax ions of the secondary metabolites directly into the mass spectrometer as a mixture. Much of that science has been driven by the great advances in ambient ionization techniques used with a suite of mass spectrometry platforms, including the alphabet soup from DESI to LAESI to MALDI. This review discusses the one in situ analysis technique that incorporates chromatography, being the droplet-liquid microjunction-surface sampling probe, which is more easily termed "droplet probe". In addition to comparing and contrasting the droplet probe with other techniques, we provide perspective on why scientists, particularly those steeped in natural products chemistry training, may want to include chromatography in in situ analyses. Moreover, we provide justification for droplet sampling, especially for samples with delicate and/or non-uniform topographies. Furthermore, while the droplet probe has been used the most in the analysis of fungal cultures, we digest a variety of other applications, ranging from cyanobacteria, to plant parts, and even delicate documents, such as herbarium specimens.

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Year:  2019        PMID: 31112181      PMCID: PMC6640111          DOI: 10.1039/c9np00019d

Source DB:  PubMed          Journal:  Nat Prod Rep        ISSN: 0265-0568            Impact factor:   13.423


  117 in total

1.  Thin-layer chromatography and electrospray mass spectrometry coupled using a surface sampling probe.

Authors:  Gary J Van Berkel; Amaury D Sanchez; J Martin E Quirke
Journal:  Anal Chem       Date:  2002-12-15       Impact factor: 6.986

2.  Enhancement of antibiotic and secondary metabolite detection from filamentous fungi by growth on nutritional arrays.

Authors:  G F Bills; G Platas; A Fillola; M R Jiménez; J Collado; F Vicente; J Martín; A González; J Bur-Zimmermann; J R Tormo; F Peláez
Journal:  J Appl Microbiol       Date:  2008-02-19       Impact factor: 3.772

3.  Regulatory cross talk and microbial induction of fungal secondary metabolite gene clusters.

Authors:  Hans-Wilhelm Nützmann; Volker Schroeckh; Axel A Brakhage
Journal:  Methods Enzymol       Date:  2012       Impact factor: 1.600

4.  Continuous-flow liquid microjunction surface sampling probe connected on-line with high-performance liquid chromatography/mass spectrometry for spatially resolved analysis of small molecules and proteins.

Authors:  Gary J Van Berkel; Vilmos Kertesz
Journal:  Rapid Commun Mass Spectrom       Date:  2013-06-30       Impact factor: 2.419

5.  Induced production of N-formyl alkaloids from Aspergillus fumigatus by co-culture with Streptomyces peucetius.

Authors:  Karina M Zuck; Suzanne Shipley; David J Newman
Journal:  J Nat Prod       Date:  2011-06-13       Impact factor: 4.050

6.  Asitrilobins A and B: cytotoxic mono-THF annonaceous acetogenins from the seeds of Asimina triloba.

Authors:  M H Woo; D H Kim; J L McLaughlin
Journal:  Phytochemistry       Date:  1999-03       Impact factor: 4.072

7.  Additional bioactive annonaceous acetogenins from Asimina triloba (Annonaceae).

Authors:  K He; G X Zhao; G Shi; L Zeng; J F Chao; J L McLaughlin
Journal:  Bioorg Med Chem       Date:  1997-03       Impact factor: 3.641

8.  Hypoxyvermelhotins A-C, new pigments from Hypoxylon lechatii sp. nov.

Authors:  Eric Kuhnert; Simone Heitkämper; Jacques Fournier; Frank Surup; Marc Stadler
Journal:  Fungal Biol       Date:  2013-12-19

9.  High-resolution MS, MS/MS, and UV database of fungal secondary metabolites as a dereplication protocol for bioactive natural products.

Authors:  Tamam El-Elimat; Mario Figueroa; Brandie M Ehrmann; Nadja B Cech; Cedric J Pearce; Nicholas H Oberlies
Journal:  J Nat Prod       Date:  2013-08-16       Impact factor: 4.050

10.  Fungus wars: basidiomycete battles in wood decay.

Authors:  J Hiscox; J O'Leary; L Boddy
Journal:  Stud Mycol       Date:  2018-02-21       Impact factor: 16.097

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  12 in total

1.  Engineering Fluorine into Verticillins (Epipolythiodioxopiperazine Alkaloids) via Precursor-Directed Biosynthesis.

Authors:  Chiraz Soumia M Amrine; Jessica L Long; Huzefa A Raja; Steven J Kurina; Joanna E Burdette; Cedric J Pearce; Nicholas H Oberlies
Journal:  J Nat Prod       Date:  2019-10-21       Impact factor: 4.050

Review 2.  Advancements in capturing and mining mass spectrometry data are transforming natural products research.

Authors:  Scott A Jarmusch; Justin J J van der Hooft; Pieter C Dorrestein; Alan K Jarmusch
Journal:  Nat Prod Rep       Date:  2021-11-17       Impact factor: 13.423

3.  Discovery of Anticancer Agents of Diverse Natural Origin.

Authors:  Leslie N Aldrich; Joanna E Burdette; Esperanza Carcache de Blanco; Christopher C Coss; Alessandra S Eustaquio; James R Fuchs; A Douglas Kinghorn; Amanda MacFarlane; Brittney K Mize; Nicholas H Oberlies; Jimmy Orjala; Cedric J Pearce; Mitch A Phelps; Liva Harinantenaina Rakotondraibe; Yulin Ren; Djaja Doel Soejarto; Brent R Stockwell; Jack C Yalowich; Xiaoli Zhang
Journal:  J Nat Prod       Date:  2022-02-25       Impact factor: 4.803

Review 4.  Evolution of the human pathogenic lifestyle in fungi.

Authors:  Antonis Rokas
Journal:  Nat Microbiol       Date:  2022-05-04       Impact factor: 30.964

Review 5.  Ethnobotany and the Role of Plant Natural Products in Antibiotic Drug Discovery.

Authors:  Gina Porras; François Chassagne; James T Lyles; Lewis Marquez; Micah Dettweiler; Akram M Salam; Tharanga Samarakoon; Sarah Shabih; Darya Raschid Farrokhi; Cassandra L Quave
Journal:  Chem Rev       Date:  2020-11-09       Impact factor: 60.622

Review 6.  Freshwater Fungi as a Source of Chemical Diversity: A Review.

Authors:  Tamam El-Elimat; Huzefa A Raja; Mario Figueroa; Ahmed H Al Sharie; Rick L Bunch; Nicholas H Oberlies
Journal:  J Nat Prod       Date:  2021-03-04       Impact factor: 4.050

7.  Cytotoxic Naphthoquinone Analogues, Including Heterodimers, and Their Structure Elucidation Using LR-HSQMBC NMR Experiments.

Authors:  Laura Flores-Bocanegra; Huzefa A Raja; Jeffrey W Bacon; Amanda C Maldonado; Joanna E Burdette; Cedric J Pearce; Nicholas H Oberlies
Journal:  J Nat Prod       Date:  2020-10-02       Impact factor: 4.050

8.  Orthogonal Method for Double-Bond Placement via Ozone-Induced Dissociation Mass Spectrometry (OzID-MS).

Authors:  Sonja L Knowles; Ngoc Vu; Daniel A Todd; Huzefa A Raja; Antonis Rokas; Qibin Zhang; Nicholas H Oberlies
Journal:  J Nat Prod       Date:  2019-12-11       Impact factor: 4.803

9.  Wheldone: Characterization of a Unique Scaffold from the Coculture of Aspergillus fischeri and Xylaria flabelliformis.

Authors:  Sonja L Knowles; Huzefa A Raja; Israa H Isawi; Laura Flores-Bocanegra; Patricia H Reggio; Cedric J Pearce; Joanna E Burdette; Antonis Rokas; Nicholas H Oberlies
Journal:  Org Lett       Date:  2020-02-25       Impact factor: 6.005

Review 10.  In situ mass spectrometry analysis of intact proteins and protein complexes from biological substrates.

Authors:  Oliver J Hale; Helen J Cooper
Journal:  Biochem Soc Trans       Date:  2020-02-28       Impact factor: 5.407

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