Literature DB >> 26901871

Structural basis of outer membrane protein insertion by the BAM complex.

Yinghong Gu1, Huanyu Li1, Haohao Dong1, Yi Zeng1, Zhengyu Zhang1, Neil G Paterson2, Phillip J Stansfeld3, Zhongshan Wang1,4,5, Yizheng Zhang5, Wenjian Wang6, Changjiang Dong1.   

Abstract

All Gram-negative bacteria, mitochondria and chloroplasts have outer membrane proteins (OMPs) that perform many fundamental biological processes. The OMPs in Gram-negative bacteria are inserted and folded into the outer membrane by the β-barrel assembly machinery (BAM). The mechanism involved is poorly understood, owing to the absence of a structure of the entire BAM complex. Here we report two crystal structures of the Escherichia coli BAM complex in two distinct states: an inward-open state and a lateral-open state. Our structures reveal that the five polypeptide transport-associated domains of BamA form a ring architecture with four associated lipoproteins, BamB-BamE, in the periplasm. Our structural, functional studies and molecular dynamics simulations indicate that these subunits rotate with respect to the integral membrane β-barrel of BamA to induce movement of the β-strands of the barrel and promote insertion of the nascent OMP.

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Year:  2016        PMID: 26901871     DOI: 10.1038/nature17199

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  62 in total

1.  Improved Parameters for the Martini Coarse-Grained Protein Force Field.

Authors:  Djurre H de Jong; Gurpreet Singh; W F Drew Bennett; Clement Arnarez; Tsjerk A Wassenaar; Lars V Schäfer; Xavier Periole; D Peter Tieleman; Siewert J Marrink
Journal:  J Chem Theory Comput       Date:  2012-11-28       Impact factor: 6.006

2.  Sequence context-specific profiles for homology searching.

Authors:  A Biegert; J Söding
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-20       Impact factor: 11.205

Review 3.  Evolution of the β-barrel assembly machinery.

Authors:  Chaille T Webb; Eva Heinz; Trevor Lithgow
Journal:  Trends Microbiol       Date:  2012-09-06       Impact factor: 17.079

4.  GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit.

Authors:  Sander Pronk; Szilárd Páll; Roland Schulz; Per Larsson; Pär Bjelkmar; Rossen Apostolov; Michael R Shirts; Jeremy C Smith; Peter M Kasson; David van der Spoel; Berk Hess; Erik Lindahl
Journal:  Bioinformatics       Date:  2013-02-13       Impact factor: 6.937

5.  Dissection of β-barrel outer membrane protein assembly pathways through characterizing BamA POTRA 1 mutants of Escherichia coli.

Authors:  Drew Bennion; Emily S Charlson; Eric Coon; Rajeev Misra
Journal:  Mol Microbiol       Date:  2010-09       Impact factor: 3.501

6.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

7.  bam Lipoproteins Assemble BamA in vitro.

Authors:  Christine L Hagan; David B Westwood; Daniel Kahne
Journal:  Biochemistry       Date:  2013-08-21       Impact factor: 3.162

8.  Structure of BamA, an essential factor in outer membrane protein biogenesis.

Authors:  Reinhard Albrecht; Monika Schütz; Philipp Oberhettinger; Michaela Faulstich; Ivan Bermejo; Thomas Rudel; Kay Diederichs; Kornelius Zeth
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-05-30

9.  Alchembed: A Computational Method for Incorporating Multiple Proteins into Complex Lipid Geometries.

Authors:  Elizabeth Jefferys; Zara A Sands; Jiye Shi; Mark S P Sansom; Philip W Fowler
Journal:  J Chem Theory Comput       Date:  2015-05-14       Impact factor: 6.006

10.  Structural insight into the biogenesis of β-barrel membrane proteins.

Authors:  Nicholas Noinaj; Adam J Kuszak; James C Gumbart; Petra Lukacik; Hoshing Chang; Nicole C Easley; Trevor Lithgow; Susan K Buchanan
Journal:  Nature       Date:  2013-09-01       Impact factor: 49.962

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  115 in total

1.  The Bam complex catalyzes efficient insertion of bacterial outer membrane proteins into membrane vesicles of variable lipid composition.

Authors:  Sunyia Hussain; Harris D Bernstein
Journal:  J Biol Chem       Date:  2018-01-08       Impact factor: 5.157

2.  Profiling the Escherichia coli membrane protein interactome captured in Peptidisc libraries.

Authors:  Michael Luke Carlson; R Greg Stacey; John William Young; Irvinder Singh Wason; Zhiyu Zhao; David G Rattray; Nichollas Scott; Craig H Kerr; Mohan Babu; Leonard J Foster; Franck Duong Van Hoa
Journal:  Elife       Date:  2019-07-31       Impact factor: 8.140

Review 3.  The β-barrel assembly machinery in motion.

Authors:  Nicholas Noinaj; James C Gumbart; Susan K Buchanan
Journal:  Nat Rev Microbiol       Date:  2017-02-20       Impact factor: 60.633

4.  Structural and Functional Characterization of the LPS Transporter LptDE from Gram-Negative Pathogens.

Authors:  Istvan Botos; Nadim Majdalani; Stephen J Mayclin; Jennifer Gehret McCarthy; Karl Lundquist; Damian Wojtowicz; Travis J Barnard; James C Gumbart; Susan K Buchanan
Journal:  Structure       Date:  2016-05-05       Impact factor: 5.006

Review 5.  Biogenesis, quality control, and structural dynamics of proteins as explored in living cells via site-directed photocrosslinking.

Authors:  Xinmiao Fu; Zengyi Chang
Journal:  Protein Sci       Date:  2019-05-10       Impact factor: 6.725

6.  Redefining the essential trafficking pathway for outer membrane lipoproteins.

Authors:  Marcin Grabowicz; Thomas J Silhavy
Journal:  Proc Natl Acad Sci U S A       Date:  2017-04-17       Impact factor: 11.205

Review 7.  Insertion of proteins and lipopolysaccharide into the bacterial outer membrane.

Authors:  Istvan Botos; Nicholas Noinaj; Susan K Buchanan
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-08-05       Impact factor: 6.237

8.  The POTRA domains of Toc75 exhibit chaperone-like function to facilitate import into chloroplasts.

Authors:  Patrick K O'Neil; Lynn G L Richardson; Yamuna D Paila; Grzegorz Piszczek; Srinivas Chakravarthy; Nicholas Noinaj; Danny Schnell
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-30       Impact factor: 11.205

9.  Membrane integration of an essential β-barrel protein prerequires burial of an extracellular loop.

Authors:  Joseph S Wzorek; James Lee; David Tomasek; Christine L Hagan; Daniel E Kahne
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-21       Impact factor: 11.205

10.  Extreme Dynamics in the BamA β-Barrel Seam.

Authors:  Pamela Arden Doerner; Marcelo C Sousa
Journal:  Biochemistry       Date:  2017-06-12       Impact factor: 3.162

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