Literature DB >> 28569500

Extreme Dynamics in the BamA β-Barrel Seam.

Pamela Arden Doerner1, Marcelo C Sousa1.   

Abstract

BamA is an essential component of the β-barrel assembly machine (BAM) that is responsible for insertion and folding of β-barrel outer membrane proteins (OMPs) in Gram-negative bacteria. BamA is an OMP itself, and its β-barrel transmembrane domain is thought to catalyze OMP insertion and folding, although the molecular mechanism remains poorly understood. Crystal structures of BamA and complementary molecular dynamics simulations have shown that its β-barrel seam (the interface between the first and last barrel strands) is destabilized. This has led to mechanistic models in which the BamA barrel seam functions as a lateral gate that opens and successively accepts β-hairpins from a nascent OMP such that a nascent barrel can bud from BamA. Consistent with this model, disulfide locking of the BamA barrel seam is lethal in Escherichia coli. Here we show that disulfide locking of the BamA barrel has no effect on its ability to catalyze folding of a model OMP into liposomes. However, disulfide trapping experiments indicate that the BamA barrel is highly dynamic in the liposome membranes, with the β-strands at the barrel seam undergoing "register sliding" by more than 14 Å both up and down the membrane. Remarkably, these extreme dynamics were also observed in the BamA barrel in the context of the native E. coli outer membrane. These results are consistent with a model in which the BamA barrel dynamics induce defects in the outer membrane that facilitate insertion of nascent OMPs.

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Year:  2017        PMID: 28569500      PMCID: PMC5995120          DOI: 10.1021/acs.biochem.7b00281

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  42 in total

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Authors:  Jörg H Kleinschmidt; Lukas K Tamm
Journal:  J Mol Biol       Date:  2002-11-22       Impact factor: 5.469

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Journal:  Nature       Date:  2007-11-29       Impact factor: 49.962

5.  Side-chain hydrophobicity scale derived from transmembrane protein folding into lipid bilayers.

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Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-23       Impact factor: 11.205

6.  Characterization of a stalled complex on the β-barrel assembly machine.

Authors:  James Lee; Mingyu Xue; Joseph S Wzorek; Tao Wu; Marcin Grabowicz; Luisa S Gronenberg; Holly A Sutterlin; Rebecca M Davis; Natividad Ruiz; Thomas J Silhavy; Daniel E Kahne
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7.  Phosphatidylethanolamine-phosphatidylglycerol bilayer as a model of the inner bacterial membrane.

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8.  Transmembrane passage of hydrophobic compounds through a protein channel wall.

Authors:  Elizabeth M Hearn; Dimki R Patel; Bryan W Lepore; Mridhu Indic; Bert van den Berg
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9.  Folding intermediates of a beta-barrel membrane protein. Kinetic evidence for a multi-step membrane insertion mechanism.

Authors:  J H Kleinschmidt; L K Tamm
Journal:  Biochemistry       Date:  1996-10-08       Impact factor: 3.162

10.  Structural insight into the biogenesis of β-barrel membrane proteins.

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Journal:  Nature       Date:  2013-09-01       Impact factor: 49.962

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  27 in total

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Journal:  J Biol Chem       Date:  2018-01-08       Impact factor: 5.157

2.  Inhibitor of intramembrane protease RseP blocks the σE response causing lethal accumulation of unfolded outer membrane proteins.

Authors:  Anna Konovalova; Marcin Grabowicz; Carl J Balibar; Juliana C Malinverni; Ronald E Painter; Daniel Riley; Paul A Mann; Hao Wang; Charles G Garlisi; Brad Sherborne; Nathan W Rigel; Dante P Ricci; Todd A Black; Terry Roemer; Thomas J Silhavy; Scott S Walker
Journal:  Proc Natl Acad Sci U S A       Date:  2018-06-25       Impact factor: 11.205

3.  C-terminal kink formation is required for lateral gating in BamA.

Authors:  Karl Lundquist; Jeremy Bakelar; Nicholas Noinaj; James C Gumbart
Journal:  Proc Natl Acad Sci U S A       Date:  2018-08-07       Impact factor: 11.205

4.  The gain-of-function allele bamA E470K bypasses the essential requirement for BamD in β-barrel outer membrane protein assembly.

Authors:  Elizabeth M Hart; Meera Gupta; Martin Wühr; Thomas J Silhavy
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5.  Efflux Pumps Represent Possible Evolutionary Convergence onto the β-Barrel Fold.

Authors:  Meghan Whitney Franklin; Sergey Nepomnyachiy; Ryan Feehan; Nir Ben-Tal; Rachel Kolodny; Joanna S G Slusky
Journal:  Structure       Date:  2018-07-26       Impact factor: 5.006

Review 6.  Outer Membrane Protein Insertion by the β-barrel Assembly Machine.

Authors:  Dante P Ricci; Thomas J Silhavy
Journal:  EcoSal Plus       Date:  2019-03

Review 7.  How the assembly and protection of the bacterial cell envelope depend on cysteine residues.

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Journal:  J Biol Chem       Date:  2020-06-02       Impact factor: 5.157

8.  Identification of a novel post-insertion step in the assembly of a bacterial outer membrane protein.

Authors:  Janine H Peterson; Sunyia Hussain; Harris D Bernstein
Journal:  Mol Microbiol       Date:  2018-09-28       Impact factor: 3.501

9.  BamA forms a translocation channel for polypeptide export across the bacterial outer membrane.

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Journal:  Mol Cell       Date:  2021-03-10       Impact factor: 17.970

10.  Membrane protein insertion through a mitochondrial β-barrel gate.

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Journal:  Science       Date:  2018-01-19       Impact factor: 47.728

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