Literature DB >> 26899167

Pay Attention to the Overlooked Cryptic Diversity in Existing Barcoding Data: the Case of Mollusca with Character-Based DNA Barcoding.

Shanmei Zou1,2, Qi Li3.   

Abstract

With the global biodiversity crisis, DNA barcoding aims for fast species identification and cryptic species diversity revelation. For more than 10 years, large amounts of DNA barcode data have been accumulating in publicly available databases, most of which were conducted by distance or tree-building methods that have often been argued, especially for cryptic species revelation. In this context, overlooked cryptic diversity may exist in the available barcoding data. The character-based DNA barcoding, however, has a good chance for detecting the overlooked cryptic diversity. In this study, marine mollusk was as the ideal case for detecting the overlooked potential cryptic species from existing cytochrome c oxidase I (COI) sequences with character-based DNA barcode. A total of 1081 COI sequences of mollusks, belonging to 176 species of 25 families of Gastropoda, Cephalopoda, and Lamellibranchia, were conducted by character analysis. As a whole, the character-based barcoding results were consistent with previous distance and tree-building analysis for species discrimination. More importantly, quite a number of species analyzed were divided into distinct clades with unique diagnostical characters. Based on the concept of cryptic species revelation of character-based barcoding, these species divided into separate taxonomic groups might be potential cryptic species. The detection of the overlooked potential cryptic diversity proves that the character-based barcoding mode possesses more advantages of revealing cryptic biodiversity. With the development of DNA barcoding, making the best use of barcoding data is worthy of our attention for species conservation.

Entities:  

Keywords:  Available barcoding data; Character-based DNA barcoding; DNA barcoding; Marine mollusks; Overlooked cryptic diversity

Mesh:

Substances:

Year:  2016        PMID: 26899167     DOI: 10.1007/s10126-016-9692-x

Source DB:  PubMed          Journal:  Mar Biotechnol (NY)        ISSN: 1436-2228            Impact factor:   3.619


  51 in total

1.  DNA barcoding of Caenogastropoda along coast of China based on the COI gene.

Authors:  Yan Sun; Qi Li; Lingfeng Kong; Xiaodong Zheng
Journal:  Mol Ecol Resour       Date:  2011-10-31       Impact factor: 7.090

Review 2.  Integrating DNA barcode data and taxonomic practice: determination, discovery, and description.

Authors:  Paul Z Goldstein; Rob DeSalle
Journal:  Bioessays       Date:  2011-02       Impact factor: 4.345

Review 3.  DNA barcoding in animal species: progress, potential and pitfalls.

Authors:  John Waugh
Journal:  Bioessays       Date:  2007-02       Impact factor: 4.345

4.  Utility of mitochondrial DNA barcodes in species conservation.

Authors:  Daniel Rubinoff
Journal:  Conserv Biol       Date:  2006-08       Impact factor: 6.560

5.  Delimiting species without monophyletic gene trees.

Authors:  L Lacey Knowles; Bryan C Carstens
Journal:  Syst Biol       Date:  2007-12       Impact factor: 15.683

6.  Character-based DNA barcoding: a superior tool for species classification.

Authors:  Tjard Bergmann; Heike Hadrys; Gerhard Breves; Bernd Schierwater
Journal:  Berl Munch Tierarztl Wochenschr       Date:  2009 Nov-Dec       Impact factor: 0.328

7.  DNA barcoding for conservation, seed banking and ecological restoration of Acacia in the Midwest of Western Australia.

Authors:  Paul G Nevill; Mark J Wallace; Joseph T Miller; Siegfried L Krauss
Journal:  Mol Ecol Resour       Date:  2013-02-25       Impact factor: 7.090

8.  DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates.

Authors:  O Folmer; M Black; W Hoeh; R Lutz; R Vrijenhoek
Journal:  Mol Mar Biol Biotechnol       Date:  1994-10

9.  How DNA barcodes complement taxonomy and explore species diversity: the case study of a poorly understood marine fauna.

Authors:  Jun Chen; Qi Li; Lingfeng Kong; Hong Yu
Journal:  PLoS One       Date:  2011-06-16       Impact factor: 3.240

10.  Comparing the usefulness of distance, monophyly and character-based DNA barcoding methods in species identification: a case study of neogastropoda.

Authors:  Shanmei Zou; Qi Li; Lingfeng Kong; Hong Yu; Xiaodong Zheng
Journal:  PLoS One       Date:  2011-10-24       Impact factor: 3.240

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  1 in total

1.  DNA barcoding for the efficient and accurate identification of medicinal polygonati rhizoma in China.

Authors:  Jie Jiao; Wenli Huang; Zhenqing Bai; Feng Liu; Cunde Ma; Zongsuo Liang
Journal:  PLoS One       Date:  2018-07-18       Impact factor: 3.240

  1 in total

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