Literature DB >> 19999380

Character-based DNA barcoding: a superior tool for species classification.

Tjard Bergmann1, Heike Hadrys, Gerhard Breves, Bernd Schierwater.   

Abstract

In zoonosis research only correct assigned host-agent-vector associations can lead to success. If most biological species on Earth, from agent to host and from procaryotes to vertebrates, are still undetected, the development of a reliable and universal diversity detection tool becomes a conditio sine qua non. In this context, in breathtaking speed, modern molecular-genetic techniques have become acknowledged tools for the classification of life forms at all taxonomic levels. While previous DNA-barcoding techniques were criticised for several reasons (Moritz and Cicero, 2004; Rubinoff et al., 2006a, b; Rubinoff, 2006; Rubinoff and Haines, 2006) a new approach, the so called CAOS-barcoding (Character Attribute Organisation System), avoids most of the weak points. Traditional DNA-barcoding approaches are based on distances, i. e. they use genetic distances and tree construction algorithms for the classification of species or lineages. The definition of limit values is enforced and prohibits a discrete or clear assignment. In comparison, the new character-based barcoding (CAOS-barcoding; DeSalle et al., 2005; DeSalle, 2006; Rach et al., 2008) works with discrete single characters and character combinations which permits a clear, unambiguous classification. In Hannover (Germany) we are optimising this system and developing a semiautomatic high-throughput procedure for hosts, agents and vectors being studied within the Zoonosis Centre of the "Stiftung Tierärztliche Hochschule Hannover". Our primary research is concentrated on insects, the most successful and species-rich animal group on Earth (every fourth animal is a bug). One subgroup, the winged insects (Pterygota), represents the outstanding majority of all zoonosis relevant animal vectors.

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Year:  2009        PMID: 19999380

Source DB:  PubMed          Journal:  Berl Munch Tierarztl Wochenschr        ISSN: 0005-9366            Impact factor:   0.328


  14 in total

1.  Pay Attention to the Overlooked Cryptic Diversity in Existing Barcoding Data: the Case of Mollusca with Character-Based DNA Barcoding.

Authors:  Shanmei Zou; Qi Li
Journal:  Mar Biotechnol (NY)       Date:  2016-02-22       Impact factor: 3.619

2.  Development of a DNA barcoding system for seagrasses: successful but not simple.

Authors:  Christina Lucas; Thirunavakkarasu Thangaradjou; Jutta Papenbrock
Journal:  PLoS One       Date:  2012-01-11       Impact factor: 3.240

3.  Comparing the usefulness of distance, monophyly and character-based DNA barcoding methods in species identification: a case study of neogastropoda.

Authors:  Shanmei Zou; Qi Li; Lingfeng Kong; Hong Yu; Xiaodong Zheng
Journal:  PLoS One       Date:  2011-10-24       Impact factor: 3.240

4.  Delineating species with DNA barcodes: a case of taxon dependent method performance in moths.

Authors:  Mari Kekkonen; Marko Mutanen; Lauri Kaila; Marko Nieminen; Paul D N Hebert
Journal:  PLoS One       Date:  2015-04-07       Impact factor: 3.240

5.  How to describe a cryptic species? Practical challenges of molecular taxonomy.

Authors:  Katharina M Jörger; Michael Schrödl
Journal:  Front Zool       Date:  2013-09-27       Impact factor: 3.172

6.  DNA barcode authentication of wood samples of threatened and commercial timber trees within the tropical dry evergreen forest of India.

Authors:  Stalin Nithaniyal; Steven G Newmaster; Subramanyam Ragupathy; Devanathan Krishnamoorthy; Sophie Lorraine Vassou; Madasamy Parani
Journal:  PLoS One       Date:  2014-09-26       Impact factor: 3.240

7.  How DNA barcoding can be more effective in microalgae identification: a case of cryptic diversity revelation in Scenedesmus (Chlorophyceae).

Authors:  Shanmei Zou; Cong Fei; Chun Wang; Zhan Gao; Yachao Bao; Meilin He; Changhai Wang
Journal:  Sci Rep       Date:  2016-11-09       Impact factor: 4.379

8.  Monophyly, distance and character-based multigene barcoding reveal extraordinary cryptic diversity in Nassarius: a complex and dangerous community.

Authors:  Shanmei Zou; Qi Li; Lingfeng Kong
Journal:  PLoS One       Date:  2012-10-11       Impact factor: 3.240

9.  Combining and Comparing Coalescent, Distance and Character-Based Approaches for Barcoding Microalgaes: A Test with Chlorella-Like Species (Chlorophyta).

Authors:  Shanmei Zou; Cong Fei; Jiameng Song; Yachao Bao; Meilin He; Changhai Wang
Journal:  PLoS One       Date:  2016-04-19       Impact factor: 3.240

10.  DNA Barcoding of Malagasy Rosewoods: Towards a Molecular Identification of CITES-Listed Dalbergia Species.

Authors:  Sonja Hassold; Porter P Lowry; Martin R Bauert; Annick Razafintsalama; Lolona Ramamonjisoa; Alex Widmer
Journal:  PLoS One       Date:  2016-06-30       Impact factor: 3.240

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