Literature DB >> 26895059

Immunodetection of Human LINE-1 Expression in Cultured Cells and Human Tissues.

Reema Sharma1, Nemanja Rodić1, Kathleen H Burns2, Martin S Taylor3,4.   

Abstract

Long interspersed element-1 (LINE-1) is the only active protein-coding retrotransposon in humans. It is not expressed in somatic tissue but is aberrantly expressed in a wide variety of human cancers. ORF1p protein is the most robust indicator of LINE-1 expression; the protein accumulates in large quantities in cellular cytoplasm. Recently, monoclonal antibodies have allowed more complete characterizations of ORF1p expression and indicated potential for developing ORF1p as a clinical biomarker. Here, we describe a mouse monoclonal antibody specific for human LINE-1 ORF1p and its application in immunofluorescence and immunohistochemistry of both cells and human tissues. We also describe detection of tagged LINE-1 ORF2p via immunofluorescence. These general methods may be readily adapted to use with many other proteins and antibodies.

Entities:  

Keywords:  Biomarker; Immunofluorescence; Immunohistochemistry; LINE-1 ORF1p; Tissue microarray; Tumor marker; p40

Mesh:

Substances:

Year:  2016        PMID: 26895059      PMCID: PMC5679191          DOI: 10.1007/978-1-4939-3372-3_17

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  20 in total

1.  Trimeric structure for an essential protein in L1 retrotransposition.

Authors:  Sandra L Martin; Dan Branciforte; David Keller; David L Bain
Journal:  Proc Natl Acad Sci U S A       Date:  2003-11-13       Impact factor: 11.205

2.  Unconventional translation of mammalian LINE-1 retrotransposons.

Authors:  Reid S Alisch; Jose L Garcia-Perez; Alysson R Muotri; Fred H Gage; John V Moran
Journal:  Genes Dev       Date:  2006-01-15       Impact factor: 11.361

3.  Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition.

Authors:  Q Feng; J V Moran; H H Kazazian; J D Boeke
Journal:  Cell       Date:  1996-11-29       Impact factor: 41.582

4.  Multiplexed quantitative analysis of CD3, CD8, and CD20 predicts response to neoadjuvant chemotherapy in breast cancer.

Authors:  Jason R Brown; Hallie Wimberly; Donald R Lannin; Christian Nixon; David L Rimm; Veerle Bossuyt
Journal:  Clin Cancer Res       Date:  2014-09-25       Impact factor: 12.531

5.  LINE-1 retrotransposition requires the nucleic acid chaperone activity of the ORF1 protein.

Authors:  Sandra L Martin; Margareta Cruceanu; Dan Branciforte; Patrick Wai-Lun Li; Stanley C Kwok; Robert S Hodges; Mark C Williams
Journal:  J Mol Biol       Date:  2005-05-06       Impact factor: 5.469

Review 6.  Biology of mammalian L1 retrotransposons.

Authors:  E M Ostertag; H H Kazazian
Journal:  Annu Rev Genet       Date:  2001       Impact factor: 16.830

7.  Affinity proteomics reveals human host factors implicated in discrete stages of LINE-1 retrotransposition.

Authors:  Martin S Taylor; John LaCava; Paolo Mita; Kelly R Molloy; Cheng Ran Lisa Huang; Donghui Li; Emily M Adney; Hua Jiang; Kathleen H Burns; Brian T Chait; Michael P Rout; Jef D Boeke; Lixin Dai
Journal:  Cell       Date:  2013-11-21       Impact factor: 41.582

8.  High-affinity, non-sequence-specific RNA binding by the open reading frame 1 (ORF1) protein from long interspersed nuclear element 1 (LINE-1).

Authors:  Vladimir O Kolosha; Sandra L Martin
Journal:  J Biol Chem       Date:  2002-12-27       Impact factor: 5.157

Review 9.  Human transposon tectonics.

Authors:  Kathleen H Burns; Jef D Boeke
Journal:  Cell       Date:  2012-05-11       Impact factor: 41.582

10.  Endogenous retrotransposition activates oncogenic pathways in hepatocellular carcinoma.

Authors:  Ruchi Shukla; Kyle R Upton; Martin Muñoz-Lopez; Daniel J Gerhardt; Malcolm E Fisher; Thu Nguyen; Paul M Brennan; J Kenneth Baillie; Agnese Collino; Serena Ghisletti; Shruti Sinha; Fabio Iannelli; Enrico Radaelli; Alexandre Dos Santos; Delphine Rapoud; Catherine Guettier; Didier Samuel; Gioacchino Natoli; Piero Carninci; Francesca D Ciccarelli; Jose Luis Garcia-Perez; Jamila Faivre; Geoffrey J Faulkner
Journal:  Cell       Date:  2013-03-28       Impact factor: 41.582

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  7 in total

Review 1.  The Human Long Interspersed Element-1 Retrotransposon: An Emerging Biomarker of Neoplasia.

Authors:  Daniel Ardeljan; Martin S Taylor; David T Ting; Kathleen H Burns
Journal:  Clin Chem       Date:  2017-02-10       Impact factor: 8.327

2.  cGAS/STING Pathway Activation Contributes to Delayed Neurodegeneration in Neonatal Hypoxia-Ischemia Rat Model: Possible Involvement of LINE-1.

Authors:  Marcin Gamdzyk; Desislava Met Doycheva; Camila Araujo; Umut Ocak; Yujie Luo; Jiping Tang; John H Zhang
Journal:  Mol Neurobiol       Date:  2020-04-06       Impact factor: 5.590

3.  LINE-1 protein localization and functional dynamics during the cell cycle.

Authors:  Paolo Mita; Aleksandra Wudzinska; Xiaoji Sun; Joshua Andrade; Shruti Nayak; David J Kahler; Sana Badri; John LaCava; Beatrix Ueberheide; Chi Y Yun; David Fenyö; Jef D Boeke
Journal:  Elife       Date:  2018-01-08       Impact factor: 8.140

4.  Somatic retrotransposition is infrequent in glioblastomas.

Authors:  Pragathi Achanta; Jared P Steranka; Zuojian Tang; Nemanja Rodić; Reema Sharma; Wan Rou Yang; Sisi Ma; Mark Grivainis; Cheng Ran Lisa Huang; Anna M Schneider; Gary L Gallia; Gregory J Riggins; Alfredo Quinones-Hinojosa; David Fenyö; Jef D Boeke; Kathleen H Burns
Journal:  Mob DNA       Date:  2016-11-11

5.  A comprehensive approach to expression of L1 loci.

Authors:  Prescott Deininger; Maria E Morales; Travis B White; Melody Baddoo; Dale J Hedges; Geraldine Servant; Sudesh Srivastav; Madison E Smither; Monica Concha; Dawn L DeHaro; Erik K Flemington; Victoria P Belancio
Journal:  Nucleic Acids Res       Date:  2017-03-17       Impact factor: 16.971

6.  Identification of charged amino acids required for nuclear localization of human L1 ORF1 protein.

Authors:  B T Freeman; M Sokolowski; A M Roy-Engel; M E Smither; V P Belancio
Journal:  Mob DNA       Date:  2019-05-06

7.  The derepression of transposable elements in lung cells is associated with the inflammatory response and gene activation in idiopathic pulmonary fibrosis.

Authors:  Mahboubeh R Rostami; Martina Bradic
Journal:  Mob DNA       Date:  2021-06-09
  7 in total

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