Literature DB >> 22579280

Human transposon tectonics.

Kathleen H Burns1, Jef D Boeke.   

Abstract

Mobile DNAs have had a central role in shaping our genome. More than half of our DNA is comprised of interspersed repeats resulting from replicative copy and paste events of retrotransposons. Although most are fixed, incapable of templating new copies, there are important exceptions to retrotransposon quiescence. De novo insertions cause genetic diseases and cancers, though reliably detecting these occurrences has been difficult. New technologies aimed at uncovering polymorphic insertions reveal that mobile DNAs provide a substantial and dynamic source of structural variation. Key questions going forward include how and how much new transposition events affect human health and disease.
Copyright © 2012 Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 22579280      PMCID: PMC3370394          DOI: 10.1016/j.cell.2012.04.019

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  133 in total

1.  Genome architecture marked by retrotransposons modulates predisposition to DNA methylation in cancer.

Authors:  Marcos R H Estécio; Juan Gallegos; Céline Vallot; Ryan J Castoro; Woonbok Chung; Shinji Maegawa; Yasuhiro Oki; Yutaka Kondo; Jaroslav Jelinek; Lanlan Shen; Helge Hartung; Peter D Aplan; Bogdan A Czerniak; Shoudan Liang; Jean-Pierre J Issa
Journal:  Genome Res       Date:  2010-08-17       Impact factor: 9.043

2.  Cis-preferential LINE-1 reverse transcriptase activity in ribonucleoprotein particles.

Authors:  Deanna A Kulpa; John V Moran
Journal:  Nat Struct Mol Biol       Date:  2006-06-18       Impact factor: 15.369

3.  Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition.

Authors:  Q Feng; J V Moran; H H Kazazian; J D Boeke
Journal:  Cell       Date:  1996-11-29       Impact factor: 41.582

4.  Human L1 retrotransposition: cis preference versus trans complementation.

Authors:  W Wei; N Gilbert; S L Ooi; J F Lawler; E M Ostertag; H H Kazazian; J D Boeke; J V Moran
Journal:  Mol Cell Biol       Date:  2001-02       Impact factor: 4.272

5.  AluY insertion (IVS4-52ins316alu) in the glycerol kinase gene from an individual with benign glycerol kinase deficiency.

Authors:  Y Zhang; K M Dipple; E Vilain; B L Huang; G Finlayson; B L Therrell; K Worley; P Deininger; E R McCabe
Journal:  Hum Mutat       Date:  2000       Impact factor: 4.878

6.  The TDRD9-MIWI2 complex is essential for piRNA-mediated retrotransposon silencing in the mouse male germline.

Authors:  Masanobu Shoji; Takashi Tanaka; Mihoko Hosokawa; Michael Reuter; Alexander Stark; Yuzuru Kato; Gen Kondoh; Katsuya Okawa; Takeshi Chujo; Tsutomu Suzuki; Kenichiro Hata; Sandra L Martin; Toshiaki Noce; Satomi Kuramochi-Miyagawa; Toru Nakano; Hiroyuki Sasaki; Ramesh S Pillai; Norio Nakatsuji; Shinichiro Chuma
Journal:  Dev Cell       Date:  2009-12       Impact factor: 12.270

7.  Meiotic catastrophe and retrotransposon reactivation in male germ cells lacking Dnmt3L.

Authors:  Déborah Bourc'his; Timothy H Bestor
Journal:  Nature       Date:  2004-08-18       Impact factor: 49.962

8.  LINE-mediated retrotransposition of marked Alu sequences.

Authors:  Marie Dewannieux; Cécile Esnault; Thierry Heidmann
Journal:  Nat Genet       Date:  2003-08-03       Impact factor: 38.330

9.  Unit-length line-1 transcripts in human teratocarcinoma cells.

Authors:  J Skowronski; T G Fanning; M F Singer
Journal:  Mol Cell Biol       Date:  1988-04       Impact factor: 4.272

Review 10.  Insertional polymorphisms: a new lease of life for endogenous retroviruses in human disease.

Authors:  David Moyes; David J Griffiths; Patrick J Venables
Journal:  Trends Genet       Date:  2007-05-23       Impact factor: 11.639

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  140 in total

Review 1.  Nuclear Noncoding RNAs and Genome Stability.

Authors:  Jasbeer S Khanduja; Isabel A Calvo; Richard I Joh; Ian T Hill; Mo Motamedi
Journal:  Mol Cell       Date:  2016-07-07       Impact factor: 17.970

2.  An Atypical AAA+ ATPase Assembly Controls Efficient Transposition through DNA Remodeling and Transposase Recruitment.

Authors:  Ernesto Arias-Palomo; James M Berger
Journal:  Cell       Date:  2015-08-13       Impact factor: 41.582

3.  Five months of voluntary wheel running downregulates skeletal muscle LINE-1 gene expression in rats.

Authors:  Matthew A Romero; Petey W Mumford; Paul A Roberson; Shelby C Osburn; Hailey A Parry; Andreas N Kavazis; L Bruce Gladden; Tonia S Schwartz; Brent A Baker; Ryan G Toedebusch; Thomas E Childs; Frank W Booth; Michael D Roberts
Journal:  Am J Physiol Cell Physiol       Date:  2019-10-16       Impact factor: 4.249

4.  SQuIRE reveals locus-specific regulation of interspersed repeat expression.

Authors:  Wan R Yang; Daniel Ardeljan; Clarissa N Pacyna; Lindsay M Payer; Kathleen H Burns
Journal:  Nucleic Acids Res       Date:  2019-03-18       Impact factor: 16.971

5.  Latent infection with Kaposi's sarcoma-associated herpesvirus enhances retrotransposition of long interspersed element-1.

Authors:  Ryota Nakayama; Yumiko Ueno; Keiji Ueda; Tomoyuki Honda
Journal:  Oncogene       Date:  2019-02-15       Impact factor: 9.867

Review 6.  Recognizing the enemy within: licensing RNA-guided genome defense.

Authors:  Phillip A Dumesic; Hiten D Madhani
Journal:  Trends Biochem Sci       Date:  2013-11-23       Impact factor: 13.807

7.  Characterization of OsMIK in a rice mutant with reduced phytate content reveals an insertion of a rearranged retrotransposon.

Authors:  Hai-Jun Zhao; Hai-Rui Cui; Xiu-Hong Xu; Yuan-Yuan Tan; Jun-Jie Fu; Guo-Zhen Liu; Yves Poirier; Qing-Yao Shu
Journal:  Theor Appl Genet       Date:  2013-09-17       Impact factor: 5.699

8.  Meeting Report: The Role of the Mobilome in Cancer.

Authors:  Daniel Ardeljan; Martin S Taylor; Kathleen H Burns; Jef D Boeke; Michael Graham Espey; Elisa C Woodhouse; Thomas Kevin Howcroft
Journal:  Cancer Res       Date:  2016-07-18       Impact factor: 12.701

9.  Piwi Is Required to Limit Exhaustion of Aging Somatic Stem Cells.

Authors:  Pedro Sousa-Victor; Arshad Ayyaz; Rippei Hayashi; Yanyan Qi; David T Madden; Victoria V Lunyak; Heinrich Jasper
Journal:  Cell Rep       Date:  2017-09-12       Impact factor: 9.423

Review 10.  Response of transposable elements to environmental stressors.

Authors:  Isabelle R Miousse; Marie-Cecile G Chalbot; Annie Lumen; Alesia Ferguson; Ilias G Kavouras; Igor Koturbash
Journal:  Mutat Res Rev Mutat Res       Date:  2015-05-30       Impact factor: 5.657

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