Literature DB >> 26892960

From Loci to Biology: Functional Genomics of Genome-Wide Association for Coronary Disease.

Sylvia T Nurnberg1, Hanrui Zhang1, Nicholas J Hand1, Robert C Bauer1, Danish Saleheen1, Muredach P Reilly2, Daniel J Rader2.   

Abstract

Genome-wide association studies have provided a rich collection of ≈ 58 coronary artery disease (CAD) loci that suggest the existence of previously unsuspected new biology relevant to atherosclerosis. However, these studies only identify genomic loci associated with CAD, and many questions remain even after a genomic locus is definitively implicated, including the nature of the causal variant(s) and the causal gene(s), as well as the directionality of effect. There are several tools that can be used for investigation of the functional genomics of these loci, and progress has been made on a limited number of novel CAD loci. New biology regarding atherosclerosis and CAD will be learned through the functional genomics of these loci, and the hope is that at least some of these new pathways relevant to CAD pathogenesis will yield new therapeutic targets for the prevention and treatment of CAD.
© 2016 American Heart Association, Inc.

Entities:  

Keywords:  atherosclerosis; coronary artery disease; functional; genome-wide; genomics

Mesh:

Substances:

Year:  2016        PMID: 26892960      PMCID: PMC4863243          DOI: 10.1161/CIRCRESAHA.115.306464

Source DB:  PubMed          Journal:  Circ Res        ISSN: 0009-7330            Impact factor:   17.367


  204 in total

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Journal:  J Mol Endocrinol       Date:  2014-02-24       Impact factor: 5.098

4.  Chemically modified guide RNAs enhance CRISPR-Cas genome editing in human primary cells.

Authors:  Ayal Hendel; Rasmus O Bak; Joseph T Clark; Andrew B Kennedy; Daniel E Ryan; Subhadeep Roy; Israel Steinfeld; Benjamin D Lunstad; Robert J Kaiser; Alec B Wilkens; Rosa Bacchetta; Anya Tsalenko; Douglas Dellinger; Laurakay Bruhn; Matthew H Porteus
Journal:  Nat Biotechnol       Date:  2015-06-29       Impact factor: 54.908

Review 5.  lincRNAs: genomics, evolution, and mechanisms.

Authors:  Igor Ulitsky; David P Bartel
Journal:  Cell       Date:  2013-07-03       Impact factor: 41.582

6.  Palmitate-induced down-regulation of sortilin and impaired GLUT4 trafficking in C2C12 myotubes.

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Journal:  J Biol Chem       Date:  2010-08-30       Impact factor: 5.157

7.  In situ localization of the genetic locus encoding the lysosomal acid lipase/cholesteryl esterase (LIPA) deficient in Wolman disease to chromosome 10q23.2-q23.3.

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Journal:  Genomics       Date:  1993-01       Impact factor: 5.736

8.  Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.

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9.  Functional Analysis of a Carotid Intima-Media Thickness Locus Implicates BCAR1 and Suggests a Causal Variant.

Authors:  Freya Boardman-Pretty; Andrew J P Smith; Jackie Cooper; Jutta Palmen; Lasse Folkersen; Anders Hamsten; Alberico L Catapano; Olle Melander; Jacqueline F Price; Meena Kumari; John E Deanfield; Mika Kivimäki; Karl Gertow; Andrea Baragetti; Giuseppe Danilo Norata; Steve E Humphries
Journal:  Circ Cardiovasc Genet       Date:  2015-08-14

10.  Pleiotropic genes for metabolic syndrome and inflammation.

Authors:  Aldi T Kraja; Daniel I Chasman; Kari E North; Alexander P Reiner; Lisa R Yanek; Tuomas O Kilpeläinen; Jennifer A Smith; Abbas Dehghan; Josée Dupuis; Andrew D Johnson; Mary F Feitosa; Fasil Tekola-Ayele; Audrey Y Chu; Ilja M Nolte; Zari Dastani; Andrew Morris; Sarah A Pendergrass; Yan V Sun; Marylyn D Ritchie; Ahmad Vaez; Honghuang Lin; Symen Ligthart; Letizia Marullo; Rebecca Rohde; Yaming Shao; Mark A Ziegler; Hae Kyung Im; Renate B Schnabel; Torben Jørgensen; Marit E Jørgensen; Torben Hansen; Oluf Pedersen; Ronald P Stolk; Harold Snieder; Albert Hofman; Andre G Uitterlinden; Oscar H Franco; M Arfan Ikram; J Brent Richards; Charles Rotimi; James G Wilson; Leslie Lange; Santhi K Ganesh; Mike Nalls; Laura J Rasmussen-Torvik; James S Pankow; Josef Coresh; Weihong Tang; W H Linda Kao; Eric Boerwinkle; Alanna C Morrison; Paul M Ridker; Diane M Becker; Jerome I Rotter; Sharon L R Kardia; Ruth J F Loos; Martin G Larson; Yi-Hsiang Hsu; Michael A Province; Russell Tracy; Benjamin F Voight; Dhananjay Vaidya; Christopher J O'Donnell; Emelia J Benjamin; Behrooz Z Alizadeh; Inga Prokopenko; James B Meigs; Ingrid B Borecki
Journal:  Mol Genet Metab       Date:  2014-05-09       Impact factor: 4.797

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  20 in total

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Review 2.  Genome-Wide Association Studies of Coronary Artery Disease: Recent Progress and Challenges Ahead.

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Journal:  Curr Atheroscler Rep       Date:  2018-07-18       Impact factor: 5.113

3.  Atherosclerosis: Successes, Surprises, and Future Challenges.

Authors:  Peter Libby; Karin E Bornfeldt; Alan R Tall
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4.  LIPA Variants in Genome-Wide Association Studies of Coronary Artery Diseases: Loss-of-Function or Gain-of-Function?

Authors:  Hanrui Zhang; Muredach P Reilly
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Review 5.  Genetics of coronary artery disease: discovery, biology and clinical translation.

Authors:  Amit V Khera; Sekar Kathiresan
Journal:  Nat Rev Genet       Date:  2017-03-13       Impact factor: 53.242

6.  Somatic Editing of Ldlr With Adeno-Associated Viral-CRISPR Is an Efficient Tool for Atherosclerosis Research.

Authors:  Kelsey E Jarrett; Ciaran Lee; Marco De Giorgi; Ayrea Hurley; Baiba K Gillard; Alexandria M Doerfler; Ang Li; Henry J Pownall; Gang Bao; William R Lagor
Journal:  Arterioscler Thromb Vasc Biol       Date:  2018-09       Impact factor: 8.311

Review 7.  Genetics-driven discovery of novel regulators of lipid metabolism.

Authors:  Elizabeth E Ha; Andrew G Van Camp; Robert C Bauer
Journal:  Curr Opin Lipidol       Date:  2019-06       Impact factor: 4.776

8.  Functional Genomics and CRISPR Applied to Cardiovascular Research and Medicine.

Authors:  Fang Li; Jianting Shi; Hong S Lu; Hanrui Zhang
Journal:  Arterioscler Thromb Vasc Biol       Date:  2019-08-21       Impact factor: 8.311

Review 9.  Trouble With Tribbles-1.

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Review 10.  Applications and Limitations of Mouse Models for Understanding Human Atherosclerosis.

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