Literature DB >> 26891978

Quantifying the chameleonic properties of macrocycles and other high-molecular-weight drugs.

Adrian Whitty1, Mengqi Zhong2, Lauren Viarengo2, Dmitri Beglov3, David R Hall4, Sandor Vajda5.   

Abstract

Key to the pharmaceutical utility of certain macrocyclic drugs is a 'chameleonic' ability to change their conformation to expose polar groups in aqueous solution, but bury them when traversing lipid membranes. Based on analysis of the structures of 20 macrocyclic compounds that are approved oral drugs, we propose that good solubility requires a topological polar surface area (TPSA, in Å(2)) of ≥0.2×molecular weight (MW). Meanwhile, good passive membrane permeability requires a molecular (i.e., 3D) PSA in nonpolar environments of ≤140Å(2). We show that one or other of these limits is almost invariably violated for compounds with MW>600Da, suggesting that some degree of chameleonic behavior is required for most high MW oral drugs.
Copyright © 2016. Published by Elsevier Ltd.

Entities:  

Mesh:

Substances:

Year:  2016        PMID: 26891978      PMCID: PMC5821503          DOI: 10.1016/j.drudis.2016.02.005

Source DB:  PubMed          Journal:  Drug Discov Today        ISSN: 1359-6446            Impact factor:   7.851


  27 in total

1.  Characteristic physical properties and structural fragments of marketed oral drugs.

Authors:  Michal Vieth; Miles G Siegel; Richard E Higgs; Ian A Watson; Daniel H Robertson; Kenneth A Savin; Gregory L Durst; Philip A Hipskind
Journal:  J Med Chem       Date:  2004-01-01       Impact factor: 7.446

2.  Conformational flexibility, internal hydrogen bonding, and passive membrane permeability: successful in silico prediction of the relative permeabilities of cyclic peptides.

Authors:  Taha Rezai; Jonathan E Bock; Mai V Zhou; Chakrapani Kalyanaraman; R Scott Lokey; Matthew P Jacobson
Journal:  J Am Chem Soc       Date:  2006-11-01       Impact factor: 15.419

Review 3.  Macrocyclic drugs and clinical candidates: what can medicinal chemists learn from their properties?

Authors:  Fabrizio Giordanetto; Jan Kihlberg
Journal:  J Med Chem       Date:  2013-09-17       Impact factor: 7.446

Review 4.  The exploration of macrocycles for drug discovery--an underexploited structural class.

Authors:  Edward M Driggers; Stephen P Hale; Jinbo Lee; Nicholas K Terrett
Journal:  Nat Rev Drug Discov       Date:  2008-07       Impact factor: 84.694

5.  ABT-263: a potent and orally bioavailable Bcl-2 family inhibitor.

Authors:  Christin Tse; Alexander R Shoemaker; Jessica Adickes; Mark G Anderson; Jun Chen; Sha Jin; Eric F Johnson; Kennan C Marsh; Michael J Mitten; Paul Nimmer; Lisa Roberts; Stephen K Tahir; Yu Xiao; Xiufen Yang; Haichao Zhang; Stephen Fesik; Saul H Rosenberg; Steven W Elmore
Journal:  Cancer Res       Date:  2008-05-01       Impact factor: 12.701

Review 6.  Recent advances on aqueous solubility prediction.

Authors:  Junmei Wang; Tingjun Hou
Journal:  Comb Chem High Throughput Screen       Date:  2011-06-01       Impact factor: 1.339

7.  Major Source of Error in QSPR Prediction of Intrinsic Thermodynamic Solubility of Drugs: Solid vs Nonsolid State Contributions?

Authors:  Yuriy A Abramov
Journal:  Mol Pharm       Date:  2015-04-30       Impact factor: 4.939

8.  In silico prediction of aqueous solubility: a multimodel protocol based on chemical similarity.

Authors:  Florent Chevillard; David Lagorce; Christelle Reynès; Bruno O Villoutreix; Philippe Vayer; Maria A Miteva
Journal:  Mol Pharm       Date:  2012-10-25       Impact factor: 4.939

9.  Optimizing PK properties of cyclic peptides: the effect of side chain substitutions on permeability and clearance().

Authors:  Arthur C Rand; Siegfried S F Leung; Heather Eng; Charles J Rotter; Raman Sharma; Amit S Kalgutkar; Yizhong Zhang; Manthena V Varma; Kathleen A Farley; Bhagyashree Khunte; Chris Limberakis; David A Price; Spiros Liras; Alan M Mathiowetz; Matthew P Jacobson; R Scott Lokey
Journal:  Medchemcomm       Date:  2012-10       Impact factor: 3.597

10.  A theoretical basis for a biopharmaceutic drug classification: the correlation of in vitro drug product dissolution and in vivo bioavailability.

Authors:  G L Amidon; H Lennernäs; V P Shah; J R Crison
Journal:  Pharm Res       Date:  1995-03       Impact factor: 4.200

View more
  36 in total

1.  Development of a Platform To Enable Efficient Permeability Evaluation of Novel Organo-Peptide Macrocycles.

Authors:  Brett A Hopkins; Hyelee Lee; Sookhee Ha; Lisa Nogle; Berengere Sauvagnat; Spencer McMinn; Graham F Smith; Nunzio Sciammetta
Journal:  ACS Med Chem Lett       Date:  2019-05-09       Impact factor: 4.345

2.  Lipophilicity prediction of peptides and peptide derivatives by consensus machine learning.

Authors:  Jens-Alexander Fuchs; Francesca Grisoni; Michael Kossenjans; Jan A Hiss; Gisbert Schneider
Journal:  Medchemcomm       Date:  2018-08-22       Impact factor: 3.597

3.  Why Some Targets Benefit from beyond Rule of Five Drugs.

Authors:  Megan Egbert; Adrian Whitty; György M Keserű; Sandor Vajda
Journal:  J Med Chem       Date:  2019-06-26       Impact factor: 7.446

4.  Two-Step Synthesis of Complex Artificial Macrocyclic Compounds.

Authors:  Rudrakshula Madhavachary; Eman M M Abdelraheem; Arianna Rossetti; Aleksandra Twarda-Clapa; Bogdan Musielak; Katarzyna Kurpiewska; Justyna Kalinowska-Tłuścik; Tad A Holak; Alexander Dömling
Journal:  Angew Chem Int Ed Engl       Date:  2017-08-01       Impact factor: 15.336

5.  The Evolving Druggability and Developability Space: Chemically Modified New Modalities and Emerging Small Molecules.

Authors:  Wenzhan Yang; Prajakta Gadgil; Venkata R Krishnamurthy; Margaret Landis; Pankajini Mallick; Dipal Patel; Phenil J Patel; Darren L Reid; Manuel Sanchez-Felix
Journal:  AAPS J       Date:  2020-01-03       Impact factor: 4.009

6.  Conformation and Permeability: Cyclic Hexapeptide Diastereomers.

Authors:  Satoshi Ono; Matthew R Naylor; Chad E Townsend; Chieko Okumura; Okimasa Okada; R Scott Lokey
Journal:  J Chem Inf Model       Date:  2019-05-08       Impact factor: 4.956

7.  Artificial Macrocycles by Ugi Reaction and Passerini Ring Closure.

Authors:  Eman M M Abdelraheem; Katarzyna Kurpiewska; Justyna Kalinowska-Tłuścik; Alexander Dömling
Journal:  J Org Chem       Date:  2016-09-15       Impact factor: 4.354

8.  Nonclassical Size Dependence of Permeation Defines Bounds for Passive Adsorption of Large Drug Molecules.

Authors:  Cameron R Pye; William M Hewitt; Joshua Schwochert; Terra D Haddad; Chad E Townsend; Lyns Etienne; Yongtong Lao; Chris Limberakis; Akihiro Furukawa; Alan M Mathiowetz; David A Price; Spiros Liras; R Scott Lokey
Journal:  J Med Chem       Date:  2017-01-25       Impact factor: 7.446

Review 9.  Tetrazoles via Multicomponent Reactions.

Authors:  Constantinos G Neochoritis; Ting Zhao; Alexander Dömling
Journal:  Chem Rev       Date:  2019-02-01       Impact factor: 60.622

10.  Stereochemistry Balances Cell Permeability and Solubility in the Naturally Derived Phepropeptin Cyclic Peptides.

Authors:  Joshua Schwochert; Yongtong Lao; Cameron R Pye; Matthew R Naylor; Prashant V Desai; Isabel C Gonzalez Valcarcel; Jaclyn A Barrett; Geri Sawada; Maria-Jesus Blanco; R Scott Lokey
Journal:  ACS Med Chem Lett       Date:  2016-06-06       Impact factor: 4.345

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.