Literature DB >> 15267290

Towards an assessment of the accuracy of density functional theory for first principles simulations of water.

Jeffrey C Grossman1, Eric Schwegler, Erik W Draeger, François Gygi, Giulia Galli.   

Abstract

A series of Car-Parrinello (CP) molecular dynamics simulations of water are presented, aimed at assessing the accuracy of density functional theory in describing the structural and dynamical properties of water at ambient conditions. We found negligible differences in structural properties obtained using the Perdew-Burke-Ernzerhof or the Becke-Lee-Yang-Parr exchange and correlation energy functionals; we also found that size effects, although not fully negligible when using 32 molecule cells, are rather small. In addition, we identified a wide range of values of the fictitious electronic mass (micro) entering the CP Lagrangian for which the electronic ground state is accurately described, yielding trajectories and average properties that are independent of the value chosen. However, care must be exercised not to carry out simulations outside this range, where structural properties may artificially depend on micro. In the case of an accurate description of the electronic ground state, and in the absence of proton quantum effects, we obtained an oxygen-oxygen correlation function that is overstructured compared to experiment, and a diffusion coefficient which is approximately ten times smaller. (c) 2004 American Institute of Physics

Entities:  

Year:  2004        PMID: 15267290     DOI: 10.1063/1.1630560

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  18 in total

1.  Reaction Mechanism for Direct Proton Transfer from Carbonic Acid to a Strong Base in Aqueous Solution I: Acid and Base Coordinate and Charge Dynamics.

Authors:  Snehasis Daschakraborty; Philip M Kiefer; Yifat Miller; Yair Motro; Dina Pines; Ehud Pines; James T Hynes
Journal:  J Phys Chem B       Date:  2016-03-02       Impact factor: 2.991

2.  Potential energy functions for atomic-level simulations of water and organic and biomolecular systems.

Authors:  William L Jorgensen; Julian Tirado-Rives
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-03       Impact factor: 11.205

3.  Ab initio molecular dynamics: concepts, recent developments, and future trends.

Authors:  Radu Iftimie; Peter Minary; Mark E Tuckerman
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-03       Impact factor: 11.205

4.  Water properties from first principles: simulations by a general-purpose quantum mechanical polarizable force field.

Authors:  A G Donchev; N G Galkin; A A Illarionov; O V Khoruzhii; M A Olevanov; V D Ozrin; M V Subbotin; V I Tarasov
Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-24       Impact factor: 11.205

Review 5.  Proton solvation and transport in aqueous and biomolecular systems: insights from computer simulations.

Authors:  Jessica M J Swanson; C Mark Maupin; Hanning Chen; Matt K Petersen; Jiancong Xu; Yujie Wu; Gregory A Voth
Journal:  J Phys Chem B       Date:  2007-04-13       Impact factor: 2.991

6.  Melting of ice under pressure.

Authors:  Eric Schwegler; Manu Sharma; François Gygi; Giulia Galli
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-22       Impact factor: 11.205

7.  Development of a polarizable intermolecular potential function (PIPF) for liquid amides and alkanes.

Authors:  Wangshen Xie; Jingzhi Pu; Alexander D Mackerell; Jiali Gao
Journal:  J Chem Theory Comput       Date:  2007       Impact factor: 6.006

8.  Oxygen tolerance of an in silico-designed bioinspired hydrogen-evolving catalyst in water.

Authors:  Patrick H-L Sit; Roberto Car; Morrel H Cohen; Annabella Selloni
Journal:  Proc Natl Acad Sci U S A       Date:  2013-01-22       Impact factor: 11.205

9.  Role of charge transfer in the structure and dynamics of the hydrated proton.

Authors:  Jessica M J Swanson; Jack Simons
Journal:  J Phys Chem B       Date:  2009-04-16       Impact factor: 2.991

Review 10.  Water in Nanopores and Biological Channels: A Molecular Simulation Perspective.

Authors:  Charlotte I Lynch; Shanlin Rao; Mark S P Sansom
Journal:  Chem Rev       Date:  2020-08-25       Impact factor: 60.622

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