Literature DB >> 26876428

Reaction Mechanism for Direct Proton Transfer from Carbonic Acid to a Strong Base in Aqueous Solution II: Solvent Coordinate-Dependent Reaction Path.

Snehasis Daschakraborty1, Philip M Kiefer1, Yifat Miller2, Yair Motro2, Dina Pines2, Ehud Pines2, James T Hynes1,3.   

Abstract

The protonation of methylamine base CH3NH2 by carbonic acid H2CO3 within a hydrogen (H)-bonded complex in aqueous solution was studied via Car-Parrinello dynamics in the preceding paper (Daschakraborty, S.; Kiefer, P. M.; Miller, Y.; Motro, Y.; Pines, D.; Pines, E.; Hynes, J. T. J. Phys. Chem. B 2016, DOI: 10.1021/acs.jpcb.5b12742). Here some important further details of the reaction path are presented, with specific emphasis on the water solvent's role. The overall reaction is barrierless and very rapid, on an ∼100 fs time scale, with the proton transfer (PT) event itself being very sudden (<10 fs). This transfer is preceded by the acid-base H-bond's compression, while the water solvent changes little until the actual PT occurrence; this results from the very strong driving force for the reaction, as indicated by the very favorable acid-protonated base ΔpKa difference. Further solvent rearrangement follows immediately the sudden PT's production of an incipient contact ion pair, stabilizing it by establishment of equilibrium solvation. The solvent water's short time scale ∼120 fs response to the incipient ion pair formation is primarily associated with librational modes and H-bond compression of water molecules around the carboxylate anion and the protonated base. This is consistent with this stabilization involving significant increase in H-bonding of hydration shell waters to the negatively charged carboxylate group oxygens' (especially the former H2CO3 donor oxygen) and the nitrogen of the positively charged protonated base's NH3(+).

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Year:  2016        PMID: 26876428      PMCID: PMC5752105          DOI: 10.1021/acs.jpcb.5b12744

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  9 in total

1.  Tracking energy transfer from excited to accepting modes: application to water bend vibrational relaxation.

Authors:  Rossend Rey; James T Hynes
Journal:  Phys Chem Chem Phys       Date:  2012-03-08       Impact factor: 3.676

2.  Unified approach for molecular dynamics and density-functional theory.

Authors: 
Journal:  Phys Rev Lett       Date:  1985-11-25       Impact factor: 9.161

3.  Reaction Mechanism for Direct Proton Transfer from Carbonic Acid to a Strong Base in Aqueous Solution I: Acid and Base Coordinate and Charge Dynamics.

Authors:  Snehasis Daschakraborty; Philip M Kiefer; Yifat Miller; Yair Motro; Dina Pines; Ehud Pines; James T Hynes
Journal:  J Phys Chem B       Date:  2016-03-02       Impact factor: 2.991

4.  How Acidic Is Carbonic Acid?

Authors:  Dina Pines; Julia Ditkovich; Tzach Mukra; Yifat Miller; Philip M Kiefer; Snehasis Daschakraborty; James T Hynes; Ehud Pines
Journal:  J Phys Chem B       Date:  2016-02-29       Impact factor: 2.991

5.  Solvation Dynamics in Liquid Water. 1. Ultrafast Energy Fluxes.

Authors:  Rossend Rey; James T Hynes
Journal:  J Phys Chem B       Date:  2015-01-30       Impact factor: 2.991

6.  Pairing mechanism among ionic liquid ions in aqueous solutions: a molecular dynamics study.

Authors:  Harsha V R Annapureddy; Liem X Dang
Journal:  J Phys Chem B       Date:  2013-07-08       Impact factor: 2.991

7.  Ultrafast solvation response in room temperature ionic liquids: possible origin and importance of the collective and the nearest neighbour solvent modes.

Authors:  Snehasis Daschakraborty; Ranjit Biswas
Journal:  J Chem Phys       Date:  2012-09-21       Impact factor: 3.488

8.  Accurate description of van der Waals complexes by density functional theory including empirical corrections.

Authors:  Stefan Grimme
Journal:  J Comput Chem       Date:  2004-09       Impact factor: 3.376

9.  Ultrafast librational relaxation of H2O in liquid water.

Authors:  Jakob Petersen; Klaus B Møller; Rossend Rey; James T Hynes
Journal:  J Phys Chem B       Date:  2012-11-26       Impact factor: 2.991

  9 in total
  3 in total

1.  Reaction Mechanism for Direct Proton Transfer from Carbonic Acid to a Strong Base in Aqueous Solution I: Acid and Base Coordinate and Charge Dynamics.

Authors:  Snehasis Daschakraborty; Philip M Kiefer; Yifat Miller; Yair Motro; Dina Pines; Ehud Pines; James T Hynes
Journal:  J Phys Chem B       Date:  2016-03-02       Impact factor: 2.991

2.  Intact carbonic acid is a viable protonating agent for biological bases.

Authors:  Daniel Aminov; Dina Pines; Philip M Kiefer; Snehasis Daschakraborty; James T Hynes; Ehud Pines
Journal:  Proc Natl Acad Sci U S A       Date:  2019-09-30       Impact factor: 11.205

3.  Ultrafast Charge Relocation Dynamics in Enol-Keto Tautomerization Monitored with a Local Soft-X-ray Probe.

Authors:  Micheline B Soley; Pablo E Videla; Erik T J Nibbering; Victor S Batista
Journal:  J Phys Chem Lett       Date:  2022-08-26       Impact factor: 6.888

  3 in total

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