Literature DB >> 33581373

Biological role and mechanism of chromatin readers in plants.

Ray Scheid1, Jiani Chen1, Xuehua Zhong2.   

Abstract

Epigenetic modifications are important gene regulatory mechanisms conserved in plants, animals, and fungi. Chromatin reader domains are protein-protein/DNA interaction modules acting within the chromatin-modifying complex to function as molecular interpreters of the epigenetic code. Understanding how reader proteins recognize specific epigenetic modifications and mediate downstream chromatin and transcriptional events is fundamental to many biological processes. Recent studies have uncovered a number of novel reader proteins with diverse functions and mechanisms in plants. Here, we provide an overview of the recent progress on reader-mark recognition modes, the mechanisms by which reader proteins influence chromatin dynamics, and how reader-chromatin interactions regulate biological function. Because of space limitations, this review focuses on reader domains in plants that specifically bind histone methylation, histone acetylation, and DNA methylation.
Copyright © 2021 Elsevier Ltd. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2021        PMID: 33581373      PMCID: PMC8222062          DOI: 10.1016/j.pbi.2021.102008

Source DB:  PubMed          Journal:  Curr Opin Plant Biol        ISSN: 1369-5266            Impact factor:   9.396


  64 in total

1.  Dual Recognition of H3K4me3 and DNA by the ISWI Component ARID5 Regulates the Floral Transition in Arabidopsis.

Authors:  Lian-Mei Tan; Rui Liu; Bo-Wen Gu; Cui-Jun Zhang; Jinyan Luo; Jing Guo; Yuhua Wang; Lixian Chen; Xuan Du; Sisi Li; Chang-Rong Shao; Yin-Na Su; Xue-Wei Cai; Rong-Nan Lin; Lin Li; She Chen; Jiamu Du; Xin-Jian He
Journal:  Plant Cell       Date:  2020-04-30       Impact factor: 11.277

Review 2.  Roles and activities of chromatin remodeling ATPases in plants.

Authors:  Soon-Ki Han; Miin-Feng Wu; Sujuan Cui; Doris Wagner
Journal:  Plant J       Date:  2015-06-08       Impact factor: 6.417

3.  Transcription factors read epigenetics.

Authors:  Timothy R Hughes; Samuel A Lambert
Journal:  Science       Date:  2017-05-05       Impact factor: 47.728

4.  RNA-directed DNA methylation has an important developmental function in Arabidopsis that is masked by the chromatin remodeler PICKLE.

Authors:  Rong Yang; Li He; Huan Huang; Jian-Kang Zhu; Rosa Lozano-Duran; Heng Zhang
Journal:  J Integr Plant Biol       Date:  2020-07-13       Impact factor: 7.061

5.  A dual flip-out mechanism for 5mC recognition by the Arabidopsis SUVH5 SRA domain and its impact on DNA methylation and H3K9 dimethylation in vivo.

Authors:  Eerappa Rajakumara; Julie A Law; Dhirendra K Simanshu; Philipp Voigt; Lianna M Johnson; Danny Reinberg; Dinshaw J Patel; Steven E Jacobsen
Journal:  Genes Dev       Date:  2011-01-15       Impact factor: 11.361

6.  A DNA Methylation Reader-Chaperone Regulator-Transcription Factor Complex Activates OsHKT1;5 Expression during Salinity Stress.

Authors:  Jie Wang; Nan Nan; Ning Li; Yutong Liu; Tian-Jing Wang; Inhwan Hwang; Bao Liu; Zheng-Yi Xu
Journal:  Plant Cell       Date:  2020-09-15       Impact factor: 11.277

7.  Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1.

Authors:  Julie A Law; Jiamu Du; Christopher J Hale; Suhua Feng; Krzysztof Krajewski; Ana Marie S Palanca; Brian D Strahl; Dinshaw J Patel; Steven E Jacobsen
Journal:  Nature       Date:  2013-05-01       Impact factor: 49.962

8.  Plant HP1 protein ADCP1 links multivalent H3K9 methylation readout to heterochromatin formation.

Authors:  Shuai Zhao; Lingling Cheng; Yifei Gao; Baichao Zhang; Xiangdong Zheng; Liang Wang; Pilong Li; Qianwen Sun; Haitao Li
Journal:  Cell Res       Date:  2018-11-13       Impact factor: 25.617

9.  SRA- and SET-domain-containing proteins link RNA polymerase V occupancy to DNA methylation.

Authors:  Lianna M Johnson; Jiamu Du; Christopher J Hale; Sylvain Bischof; Suhua Feng; Ramakrishna K Chodavarapu; Xuehua Zhong; Giuseppe Marson; Matteo Pellegrini; David J Segal; Dinshaw J Patel; Steven E Jacobsen
Journal:  Nature       Date:  2014-01-22       Impact factor: 49.962

10.  Dual recognition of H3K4me3 and H3K27me3 by a plant histone reader SHL.

Authors:  Shuiming Qian; Xinchen Lv; Ray N Scheid; Li Lu; Zhenlin Yang; Wei Chen; Rui Liu; Melissa D Boersma; John M Denu; Xuehua Zhong; Jiamu Du
Journal:  Nat Commun       Date:  2018-06-21       Impact factor: 14.919

View more
  2 in total

Review 1.  The Dynamism of Transposon Methylation for Plant Development and Stress Adaptation.

Authors:  Muthusamy Ramakrishnan; Lakkakula Satish; Ruslan Kalendar; Mathiyazhagan Narayanan; Sabariswaran Kandasamy; Anket Sharma; Abolghassem Emamverdian; Qiang Wei; Mingbing Zhou
Journal:  Int J Mol Sci       Date:  2021-10-21       Impact factor: 5.923

2.  The impacts of allopolyploidization on Methyl-CpG-Binding Domain (MBD) gene family in Brassica napus.

Authors:  Yafang Xiao; Mengdi Li; Jianbo Wang
Journal:  BMC Plant Biol       Date:  2022-03-07       Impact factor: 4.215

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.