Literature DB >> 26873592

Molecular basis of ion permeability in a voltage-gated sodium channel.

Claire E Naylor1, Claire Bagnéris1, Paul G DeCaen2, Altin Sula1, Antonella Scaglione2, David E Clapham2, B A Wallace3.   

Abstract

Voltage-gated sodium channels are essential for electrical signalling across cell membranes. They exhibit strong selectivities for sodium ions over other cations, enabling the finely tuned cascade of events associated with action potentials. This paper describes the ion permeability characteristics and the crystal structure of a prokaryotic sodium channel, showing for the first time the detailed locations of sodium ions in the selectivity filter of a sodium channel. Electrostatic calculations based on the structure are consistent with the relative cation permeability ratios (Na(+) ≈ Li(+) ≫ K(+), Ca(2+), Mg(2+)) measured for these channels. In an E178D selectivity filter mutant constructed to have altered ion selectivities, the sodium ion binding site nearest the extracellular side is missing. Unlike potassium ions in potassium channels, the sodium ions in these channels appear to be hydrated and are associated with side chains of the selectivity filter residues, rather than polypeptide backbones.
© 2016 The Authors. Published under the terms of the CC BY 4.0 license.

Entities:  

Keywords:  crystal structure; electrophysiology; ion permeability; sodium channel

Mesh:

Substances:

Year:  2016        PMID: 26873592      PMCID: PMC4972137          DOI: 10.15252/embj.201593285

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  46 in total

1.  A prokaryotic voltage-gated sodium channel.

Authors:  D Ren; B Navarro; H Xu; L Yue; Q Shi; D E Clapham
Journal:  Science       Date:  2001-12-14       Impact factor: 47.728

2.  Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions.

Authors:  E Krissinel; K Henrick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-11-26

3.  Structure of a prokaryotic sodium channel pore reveals essential gating elements and an outer ion binding site common to eukaryotic channels.

Authors:  David Shaya; Felix Findeisen; Fayal Abderemane-Ali; Cristina Arrigoni; Stephanie Wong; Shailika Reddy Nurva; Gildas Loussouarn; Daniel L Minor
Journal:  J Mol Biol       Date:  2013-10-10       Impact factor: 5.469

4.  Prokaryotic NavMs channel as a structural and functional model for eukaryotic sodium channel antagonism.

Authors:  Claire Bagnéris; Paul G DeCaen; Claire E Naylor; David C Pryde; Irene Nobeli; David E Clapham; B A Wallace
Journal:  Proc Natl Acad Sci U S A       Date:  2014-05-21       Impact factor: 11.205

5.  On the structural basis for size-selective permeation of organic cations through the voltage-gated sodium channel. Effect of alanine mutations at the DEKA locus on selectivity, inhibition by Ca2+ and H+, and molecular sieving.

Authors:  Y M Sun; I Favre; L Schild; E Moczydlowski
Journal:  J Gen Physiol       Date:  1997-12       Impact factor: 4.086

Review 6.  Scaling and assessment of data quality.

Authors:  Philip Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14

7.  APBSmem: a graphical interface for electrostatic calculations at the membrane.

Authors:  Keith M Callenberg; Om P Choudhary; Gabriel L de Forest; David W Gohara; Nathan A Baker; Michael Grabe
Journal:  PLoS One       Date:  2010-09-29       Impact factor: 3.240

8.  The crystal structure of a voltage-gated sodium channel.

Authors:  Jian Payandeh; Todd Scheuer; Ning Zheng; William A Catterall
Journal:  Nature       Date:  2011-07-10       Impact factor: 49.962

9.  Role of the C-terminal domain in the structure and function of tetrameric sodium channels.

Authors:  Claire Bagnéris; Paul G Decaen; Benjamin A Hall; Claire E Naylor; David E Clapham; Christopher W M Kay; B A Wallace
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

10.  Structure of a bacterial voltage-gated sodium channel pore reveals mechanisms of opening and closing.

Authors:  Emily C McCusker; Claire Bagnéris; Claire E Naylor; Ambrose R Cole; Nazzareno D'Avanzo; Colin G Nichols; B A Wallace
Journal:  Nat Commun       Date:  2012       Impact factor: 14.919

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  44 in total

1.  Ca2+ entry through NaV channels generates submillisecond axonal Ca2+ signaling.

Authors:  Naomi Ak Hanemaaijer; Marko A Popovic; Xante Wilders; Sara Grasman; Oriol Pavón Arocas; Maarten Hp Kole
Journal:  Elife       Date:  2020-06-17       Impact factor: 8.140

Review 2.  The chemical basis for electrical signaling.

Authors:  William A Catterall; Goragot Wisedchaisri; Ning Zheng
Journal:  Nat Chem Biol       Date:  2017-04-13       Impact factor: 15.040

3.  Role of the Interaction Motif in Maintaining the Open Gate of an Open Sodium Channel.

Authors:  Song Ke; Martin B Ulmschneider; B A Wallace; Jakob P Ulmschneider
Journal:  Biophys J       Date:  2018-10-04       Impact factor: 4.033

4.  Three in a row-how sodium ions cross the channel.

Authors:  Werner Kühlbrandt
Journal:  EMBO J       Date:  2016-03-21       Impact factor: 11.598

5.  The Receptor Site and Mechanism of Action of Sodium Channel Blocker Insecticides.

Authors:  Yongqiang Zhang; Yuzhe Du; Dingxin Jiang; Caitlyn Behnke; Yoshiko Nomura; Boris S Zhorov; Ke Dong
Journal:  J Biol Chem       Date:  2016-08-03       Impact factor: 5.157

6.  Protonation state of inhibitors determines interaction sites within voltage-gated sodium channels.

Authors:  Amanda Buyan; Delin Sun; Ben Corry
Journal:  Proc Natl Acad Sci U S A       Date:  2018-02-21       Impact factor: 11.205

Review 7.  Ion channels and ion selectivity.

Authors:  Benoît Roux
Journal:  Essays Biochem       Date:  2017-05-09       Impact factor: 8.000

8.  Modeling the human Nav1.5 sodium channel: structural and mechanistic insights of ion permeation and drug blockade.

Authors:  Marawan Ahmed; Horia Jalily Hasani; Aravindhan Ganesan; Michael Houghton; Khaled Barakat
Journal:  Drug Des Devel Ther       Date:  2017-08-04       Impact factor: 4.162

9.  Molecular basis of ion permeability in a voltage-gated sodium channel.

Authors:  Claire E Naylor; Claire Bagnéris; Paul G DeCaen; Altin Sula; Antonella Scaglione; David E Clapham; B A Wallace
Journal:  EMBO J       Date:  2016-02-12       Impact factor: 11.598

10.  Molecular Dynamics of Ion Conduction through the Selectivity Filter of the NaVAb Sodium Channel.

Authors:  Karen M Callahan; Benoît Roux
Journal:  J Phys Chem B       Date:  2018-10-29       Impact factor: 2.991

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