Literature DB >> 28487397

Ion channels and ion selectivity.

Benoît Roux1.   

Abstract

Specific macromolecular transport systems, ion channels and pumps, provide the pathways to facilitate and control the passage of ions across the lipid membrane. Ion channels provide energetically favourable passage for ions to diffuse rapidly and passively according to their electrochemical potential. Selective ion channels are essential for the excitability of biological membranes: the action potential is a transient phenomenon that reflects the rapid opening and closing of voltage-dependent Na+-selective and K+-selective channels. One of the most critical functional aspects of K+ channels is their ability to remain highly selective for K+ over Na+ while allowing high-throughput ion conduction at a rate close to the diffusion limit. Permeation through the K+ channel selectivity filter is believed to proceed as a 'knockon' mechanism, in which 2-3 K+ ions interspersed by water molecules move in a single file. Permeation through the comparatively wider and less selective Na+ channels also proceeds via a loosely coupled knockon mechanism, although the ions do not need to be fully dehydrated. While simple structural concepts are often invoked to rationalize the mechanism of ion selectivity, a deeper analysis shows that subtle effects play an important role in these flexible dynamical structures.
© 2017 The Author(s). Published by Portland Press Limited on behalf of the Biochemical Society.

Entities:  

Keywords:  free energy; hydration; molecular dynamics; solvation

Mesh:

Substances:

Year:  2017        PMID: 28487397      PMCID: PMC5544903          DOI: 10.1042/EBC20160074

Source DB:  PubMed          Journal:  Essays Biochem        ISSN: 0071-1365            Impact factor:   8.000


  73 in total

1.  K(+)/Na(+) selectivity of the KcsA potassium channel from microscopic free energy perturbation calculations.

Authors:  V B Luzhkov; J Aqvist
Journal:  Biochim Biophys Acta       Date:  2001-08-13

2.  On the selective ion binding hypothesis for potassium channels.

Authors:  Ilsoo Kim; Toby W Allen
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-19       Impact factor: 11.205

3.  Molecular dynamics of the KcsA K(+) channel in a bilayer membrane.

Authors:  S Bernèche; B Roux
Journal:  Biophys J       Date:  2000-06       Impact factor: 4.033

4.  Protein interactions central to stabilizing the K+ channel selectivity filter in a four-sited configuration for selective K+ permeation.

Authors:  David B Sauer; Weizhong Zeng; Srinivasan Raghunathan; Youxing Jiang
Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-20       Impact factor: 11.205

5.  Molecular dynamics of ion transport through the open conformation of a bacterial voltage-gated sodium channel.

Authors:  Martin B Ulmschneider; Claire Bagnéris; Emily C McCusker; Paul G Decaen; Markus Delling; David E Clapham; Jakob P Ulmschneider; B A Wallace
Journal:  Proc Natl Acad Sci U S A       Date:  2013-03-29       Impact factor: 11.205

6.  Multi-ion free energy landscapes underscore the microscopic mechanism of ion selectivity in the KcsA channel.

Authors:  David Medovoy; Eduardo Perozo; Benoît Roux
Journal:  Biochim Biophys Acta       Date:  2016-02-16

7.  Ion-controlled conformational dynamics in the outward-open transition from an occluded state of LeuT.

Authors:  Chunfeng Zhao; Sebastian Stolzenberg; Luis Gracia; Harel Weinstein; Sergei Noskov; Lei Shi
Journal:  Biophys J       Date:  2012-09-05       Impact factor: 4.033

Review 8.  Ion selectivity in channels and transporters.

Authors:  Benoît Roux; Simon Bernèche; Bernhard Egwolf; Bogdan Lev; Sergei Y Noskov; Christopher N Rowley; Haibo Yu
Journal:  J Gen Physiol       Date:  2011-05       Impact factor: 4.086

Review 9.  Deciphering voltage-gated Na(+) and Ca(2+) channels by studying prokaryotic ancestors.

Authors:  William A Catterall; Ning Zheng
Journal:  Trends Biochem Sci       Date:  2015-08-05       Impact factor: 13.807

10.  Potassium channels in myelinated nerve. Selective permeability to small cations.

Authors:  B Hille
Journal:  J Gen Physiol       Date:  1973-06       Impact factor: 4.086

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  22 in total

1.  Challenges and advances in atomistic simulations of potassium and sodium ion channel gating and permeation.

Authors:  Kevin R DeMarco; Slava Bekker; Igor Vorobyov
Journal:  J Physiol       Date:  2018-12-19       Impact factor: 5.182

2.  Weak Cation Selectivity in HCN Channels Results From K+-Mediated Release of Na+ From Selectivity Filter Binding Sites.

Authors:  Daniel Bauer; Jan Wissmann; Anna Moroni; Gerhard Thiel; Kay Hamacher
Journal:  Function (Oxf)       Date:  2022-04-22

Review 3.  Molecular dynamics: a powerful tool for studying the medicinal chemistry of ion channel modulators.

Authors:  Daniel Şterbuleac
Journal:  RSC Med Chem       Date:  2021-07-22

4.  Many-body effect determines the selectivity for Ca2+ and Mg2+ in proteins.

Authors:  Zhifeng Jing; Chengwen Liu; Rui Qi; Pengyu Ren
Journal:  Proc Natl Acad Sci U S A       Date:  2018-07-23       Impact factor: 11.205

Review 5.  A guide to plasma membrane solute carrier proteins.

Authors:  Mattia D Pizzagalli; Ariel Bensimon; Giulio Superti-Furga
Journal:  FEBS J       Date:  2020-09-18       Impact factor: 5.542

Review 6.  Why Nature Chose Potassium.

Authors:  Antoine Danchin; Pablo Iván Nikel
Journal:  J Mol Evol       Date:  2019-10-28       Impact factor: 2.395

Review 7.  Novel insights in linking solvent relaxation dynamics and protein conformations utilizing red edge excitation shift approach.

Authors:  Rupasree Brahma; H Raghuraman
Journal:  Emerg Top Life Sci       Date:  2021-05-14

8.  Conductance selectivity of Na+ across the K+ channel via Na+ trapped in a tortuous trajectory.

Authors:  Kenichiro Mita; Takashi Sumikama; Masayuki Iwamoto; Yuka Matsuki; Kenji Shigemi; Shigetoshi Oiki
Journal:  Proc Natl Acad Sci U S A       Date:  2021-03-23       Impact factor: 12.779

9.  Gating-related Structural Dynamics of the MgtE Magnesium Channel in Membrane-Mimetics Utilizing Site-Directed Tryptophan Fluorescence.

Authors:  Satyaki Chatterjee; Rupasree Brahma; H Raghuraman
Journal:  J Mol Biol       Date:  2020-10-22       Impact factor: 5.469

10.  Ions and Water Dancing through Atom-Scale Holes: A Perspective toward "Size Zero".

Authors:  Jothi Priyanka Thiruraman; Paul Masih Das; Marija Drndić
Journal:  ACS Nano       Date:  2020-03-20       Impact factor: 18.027

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