Literature DB >> 26870520

Crystal structure of (Z)-3-allyl-5-(4-methyl-benzyl-idene)-2-sulfanyl-idene-1,3-thia-zolidin-4-one.

Rahhal El Ajlaoui1, El Mostapha Rakib1, Mohammed Chigr1, Mohamed Saadi2, Lahcen El Ammari2.   

Abstract

In the title compound, C14H13NOS2, the atoms of the allyl group are disordered over two sets of sites, with an occupancy ratio of 0.559 (10):0.441 (10). The rhodanine ring makes a dihedral angle of 5.51 (12)° with the mean plane through the p-tolyl group. There are no specific inter-molecular inter-actions in the crystal packing.

Entities:  

Keywords:  1,3-thia­zolidin-4-one; biological activity; crystal structure; rhodanine-based mol­ecules

Year:  2015        PMID: 26870520      PMCID: PMC4719873          DOI: 10.1107/S2056989015020460

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For biological activities of rhodanine-based mol­ecules, see: Tomasić & Masic (2009 ▸); Jiang et al. (2011 ▸); Bulic et al. (2009 ▸); Sing et al. (2001 ▸); Grant et al. (2000 ▸); Orchard et al. (2004 ▸); Cutshall et al. (2005 ▸); Sortino et al. (2007 ▸); Kesel (2003 ▸).

Experimental

Crystal data

C14H13NOS2 M = 275.37 Triclinic, a = 7.3606 (4) Å b = 8.8342 (6) Å c = 11.3134 (7) Å α = 109.736 (2)° β = 95.380 (2)° γ = 96.502 (2)° V = 681.10 (7) Å3 Z = 2 Mo Kα radiation μ = 0.38 mm−1 T = 296 K 0.37 × 0.35 × 0.28 mm

Data collection

Bruker X8 APEX diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▸) T min = 0.700, T max = 0.746 21519 measured reflections 2853 independent reflections 2241 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.133 S = 1.07 2853 reflections 182 parameters 2 restraints H-atom parameters constrained Δρmax = 0.34 e Å−3 Δρmin = −0.21 e Å−3

Data collection: APEX2 (Bruker, 2009 ▸); cell refinement: SAINT (Bruker, 2009 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▸); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▸) and ORTEP-3 for Windows (Farrugia, 2012 ▸); software used to prepare material for publication: PLATON (Spek, 2009 ▸) and publCIF (Westrip, 2010 ▸). Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989015020460/im2472sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015020460/im2472Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015020460/im2472Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015020460/im2472fig1.tif Plot of the mol­ecule of the title compound with displacement ellipsoids are drawn at the 50% probability level. H atoms are represented as small circles. CCDC reference: 1433844 Additional supporting information: crystallographic information; 3D view; checkCIF report
C14H13NOS2F(000) = 288
Mr = 275.37Dx = 1.343 Mg m3
Triclinic, P1Melting point: 390 K
a = 7.3606 (4) ÅMo Kα radiation, λ = 0.71073 Å
b = 8.8342 (6) ÅCell parameters from 2853 reflections
c = 11.3134 (7) Åθ = 2.5–26.6°
α = 109.736 (2)°µ = 0.38 mm1
β = 95.380 (2)°T = 296 K
γ = 96.502 (2)°Block, yellow
V = 681.10 (7) Å30.37 × 0.35 × 0.28 mm
Z = 2
Bruker X8 APEX diffractometer2853 independent reflections
Radiation source: fine-focus sealed tube2241 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.032
φ and ω scansθmax = 26.6°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −9→9
Tmin = 0.700, Tmax = 0.746k = −11→11
21519 measured reflectionsl = −14→14
Refinement on F22 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.043H-atom parameters constrained
wR(F2) = 0.133w = 1/[σ2(Fo2) + (0.0651P)2 + 0.2196P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max < 0.001
2853 reflectionsΔρmax = 0.34 e Å3
182 parametersΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/UeqOcc. (<1)
C10.5130 (4)0.6507 (3)1.2642 (3)0.0784 (7)
H1A0.38570.60241.23760.118*
H1B0.54400.67231.35330.118*
H1C0.53290.75091.24810.118*
C20.6328 (3)0.5359 (3)1.1916 (2)0.0591 (5)
C30.8224 (3)0.5758 (3)1.2117 (2)0.0644 (6)
H30.87730.67541.27200.077*
C40.9323 (3)0.4717 (3)1.1444 (2)0.0608 (6)
H41.05990.50211.16070.073*
C50.8563 (3)0.3212 (2)1.05205 (18)0.0507 (5)
C60.6656 (3)0.2794 (3)1.0338 (2)0.0604 (5)
H60.61030.17910.97470.073*
C70.5571 (3)0.3847 (3)1.1022 (2)0.0659 (6)
H70.42960.35361.08820.079*
C80.9804 (3)0.2217 (3)0.98157 (19)0.0530 (5)
H81.10480.26471.00780.064*
C90.9485 (3)0.0782 (3)0.88491 (19)0.0518 (5)
C101.1041 (3)0.0018 (3)0.8283 (2)0.0552 (5)
C110.8509 (3)−0.1882 (3)0.7007 (2)0.0594 (5)
C121.1670 (4)−0.2379 (3)0.6539 (2)0.0695 (6)
H12A1.1258−0.35370.63060.083*
H12B1.2900−0.21020.70180.083*
C13A1.1640 (13)−0.1898 (15)0.5393 (11)0.090 (3)0.441 (10)
H13A1.0526−0.21810.48520.108*0.441 (10)
C14A1.3042 (16)−0.1105 (14)0.5064 (12)0.147 (5)0.441 (10)
H14A1.4185−0.07940.55730.177*0.441 (10)
H14B1.2876−0.08630.43260.177*0.441 (10)
C13B1.2460 (12)−0.1897 (10)0.5554 (8)0.077 (2)0.559 (10)
H13B1.3415−0.24080.51960.092*0.559 (10)
C14B1.1877 (12)−0.0760 (8)0.5147 (6)0.101 (3)0.559 (10)
H14C1.0923−0.02310.54910.121*0.559 (10)
H14D1.2423−0.04970.45190.121*0.559 (10)
N11.0378 (3)−0.1426 (2)0.72653 (17)0.0560 (4)
O11.2661 (2)0.0540 (2)0.86169 (17)0.0734 (5)
S10.73489 (11)−0.35069 (9)0.59005 (7)0.0874 (3)
S20.73980 (7)−0.04619 (7)0.80585 (5)0.0607 (2)
U11U22U33U12U13U23
C10.0840 (18)0.0719 (16)0.0752 (17)0.0164 (14)0.0191 (14)0.0170 (14)
C20.0674 (13)0.0592 (13)0.0517 (12)0.0074 (10)0.0086 (10)0.0217 (10)
C30.0730 (15)0.0523 (12)0.0566 (12)−0.0057 (11)0.0068 (11)0.0102 (10)
C40.0523 (11)0.0603 (13)0.0602 (13)−0.0082 (10)0.0000 (10)0.0165 (11)
C50.0541 (11)0.0526 (11)0.0445 (10)−0.0004 (9)0.0024 (8)0.0200 (9)
C60.0567 (12)0.0552 (12)0.0564 (12)−0.0027 (10)−0.0022 (10)0.0093 (10)
C70.0497 (12)0.0697 (14)0.0679 (14)0.0011 (10)0.0030 (10)0.0149 (12)
C80.0503 (11)0.0537 (11)0.0523 (11)−0.0027 (9)0.0008 (9)0.0201 (9)
C90.0527 (11)0.0529 (11)0.0502 (11)0.0019 (9)0.0022 (9)0.0218 (9)
C100.0592 (12)0.0566 (12)0.0521 (11)0.0056 (10)0.0077 (9)0.0231 (10)
C110.0710 (14)0.0527 (12)0.0531 (12)0.0057 (10)−0.0007 (10)0.0204 (10)
C120.0810 (16)0.0628 (14)0.0660 (14)0.0176 (12)0.0197 (12)0.0197 (12)
C13A0.078 (6)0.123 (8)0.077 (5)0.049 (7)0.023 (5)0.030 (5)
C14A0.171 (11)0.176 (11)0.163 (10)0.100 (10)0.091 (9)0.106 (9)
C13B0.064 (4)0.102 (4)0.081 (4)0.033 (4)0.036 (4)0.040 (3)
C14B0.128 (7)0.105 (5)0.092 (4)0.026 (4)0.043 (4)0.054 (4)
N10.0635 (11)0.0541 (10)0.0526 (10)0.0100 (8)0.0082 (8)0.0211 (8)
O10.0546 (9)0.0745 (11)0.0810 (11)0.0037 (8)0.0101 (8)0.0164 (9)
S10.0934 (5)0.0627 (4)0.0795 (5)0.0007 (3)−0.0076 (4)−0.0002 (3)
S20.0540 (3)0.0597 (4)0.0580 (3)0.0004 (2)−0.0020 (2)0.0126 (3)
C1—C21.502 (3)C10—O11.204 (3)
C1—H1A0.9600C10—N11.397 (3)
C1—H1B0.9600C11—N11.364 (3)
C1—H1C0.9600C11—S11.633 (2)
C2—C31.378 (3)C11—S21.751 (2)
C2—C71.390 (3)C12—C13B1.465 (8)
C3—C41.374 (3)C12—N11.466 (3)
C3—H30.9300C12—C13A1.493 (12)
C4—C51.399 (3)C12—H12A0.9700
C4—H40.9300C12—H12B0.9700
C5—C61.388 (3)C13A—C14A1.3337 (10)
C5—C81.445 (3)C13A—H13A0.9300
C6—C71.378 (3)C14A—H14A0.9300
C6—H60.9300C14A—H14B0.9300
C7—H70.9300C13B—C14B1.3331 (10)
C8—C91.344 (3)C13B—H13B0.9300
C8—H80.9300C14B—H14C0.9300
C9—C101.482 (3)C14B—H14D0.9300
C9—S21.750 (2)
C2—C1—H1A109.5O1—C10—N1123.1 (2)
C2—C1—H1B109.5O1—C10—C9126.5 (2)
H1A—C1—H1B109.5N1—C10—C9110.46 (18)
C2—C1—H1C109.5N1—C11—S1127.64 (18)
H1A—C1—H1C109.5N1—C11—S2110.78 (16)
H1B—C1—H1C109.5S1—C11—S2121.58 (15)
C3—C2—C7117.3 (2)C13B—C12—N1119.7 (3)
C3—C2—C1121.3 (2)N1—C12—C13A103.2 (5)
C7—C2—C1121.4 (2)N1—C12—H12A111.1
C4—C3—C2121.4 (2)C13A—C12—H12A111.1
C4—C3—H3119.3N1—C12—H12B111.1
C2—C3—H3119.3C13A—C12—H12B111.1
C3—C4—C5121.4 (2)H12A—C12—H12B109.1
C3—C4—H4119.3C14A—C13A—C12126.8 (11)
C5—C4—H4119.3C14A—C13A—H13A116.6
C6—C5—C4117.1 (2)C12—C13A—H13A116.6
C6—C5—C8124.73 (19)C13A—C14A—H14A120.0
C4—C5—C8118.14 (19)C13A—C14A—H14B120.0
C7—C6—C5120.8 (2)H14A—C14A—H14B120.0
C7—C6—H6119.6C14B—C13B—C12123.2 (7)
C5—C6—H6119.6C14B—C13B—H13B118.4
C6—C7—C2121.8 (2)C12—C13B—H13B118.4
C6—C7—H7119.1C13B—C14B—H14C120.0
C2—C7—H7119.1C13B—C14B—H14D120.0
C9—C8—C5131.6 (2)H14C—C14B—H14D120.0
C9—C8—H8114.2C11—N1—C10116.69 (19)
C5—C8—H8114.2C11—N1—C12123.1 (2)
C8—C9—C10120.57 (19)C10—N1—C12120.2 (2)
C8—C9—S2130.12 (17)C9—S2—C1192.73 (10)
C10—C9—S2109.31 (15)
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