| Literature DB >> 26842546 |
Matteo Marcantonio1, Markus Metz2, Frédéric Baldacchino3, Daniele Arnoldi4, Fabrizio Montarsi5, Gioia Capelli6, Sara Carlin7, Markus Neteler8, Annapaola Rizzoli9.
Abstract
BACKGROUND: Invasive alien species represent a growing threat for natural systems, economy and human health. Active surveillance and responses that readily suppress newly established colonies are effective actions to mitigate the noxious consequences of biological invasions. However, when an exotic species establishes a viable population in a new area, predicting its potential spread is the most effective way to implement adequate control actions. Emerging invasive species, despite monitoring efforts, are poorly known in terms of behaviour and capacity to adapt to the new invaded range. Therefore, tools that provide information on their spread by maximising the available data, are critical.Entities:
Mesh:
Year: 2016 PMID: 26842546 PMCID: PMC4739402 DOI: 10.1186/s13071-016-1340-9
Source DB: PubMed Journal: Parasit Vectors ISSN: 1756-3305 Impact factor: 3.876
Fig. 1Study areas: Right side: European map with the two red rectangles showing Ae. koreicus positive areas for Ae. koreicus in Italy (big rectangle) and in Belgium (small rectangle). For the statistical analysis, the Italian study area was used as the training area while the Belgian one as the test area. Left side: Zoom of the Italian study area showing trap locations and major cities, with the shaded digital elevation model as background
Description of the predictor variables. We reported source and spatial resolution of each group of predictor variables
| N | Variable | Source | Spatial resolution |
|---|---|---|---|
| 19 | Bioclim 1–19* | MODIS LST/CMORPH | 250 m |
| 1 | Avg. T growing season | MODIS LST | 250 m |
| 1 | Avg. T coldest month | MODIS LST | 250 m |
| 4 | seasonal NDWI | MODIS LST | 250 m |
| 4 | seasonal NDVI | MODIS LST | 250 m |
* http://www.worldclim.org/bioclim
Average and precision for informed and non informed priors. The precision of a distribution is the inverse of its standard deviation
| Predictor | Average | Precision |
|---|---|---|
|
| 2.580 | 0.835 |
|
| 1.9623 | 0.654 |
| Others | 0 | 10e–12 |
aValues from [22]
Predictor variables used in the GIS physiology-based suitability model. The descriptive statistics refers to the location of all the positive traps in the study area
| Parameter | Average | Standard deviation | Lower bound - 99 % CI |
|---|---|---|---|
|
| 21.41 | 10.76 | 18.63 |
|
| 0.38 | 1.33 | −3.06 |
|
| 1182 | 105 | 912 |
Fig. 2Ae. koreicus potential distribution maps: The values range from 0: no suitability; to 1: complete suitability. The green triangles represent the centroids of the main cities in the area
Model specifications and DIC for the best 15 logBAY models plus the full model
| N | Model terms | DIC |
|---|---|---|
| 1 |
| 272.0 |
| 2 |
| 264.0 |
| 3 |
| 222.0 |
| 4 |
| 222.0 |
| 5 |
| 220.2 |
| 6 |
| 220.0 |
| 7 |
| 218.2 |
| 8 |
| 217.0 |
| 9 |
| 215.4 |
| 10 |
| 215.0 |
| 11 |
| 215.0 |
| 12 |
| 212.0 |
| 13 |
| 211.6 |
| 14 |
| 210.8 |
| 15 |
| 209.5 |
| 16 |
| 208.3 |
Model performance accuracy. We reported the suitability thresholds at which sensitivity plus specificity were maximized, Kappa statistics, TSS and error rate for each of the model
| Model | Optimal Threshold | Kappa | TSS | Predicted high - Presence | Predicted low - Absence | Error rate (%) |
|---|---|---|---|---|---|---|
| MaxEnt | 0.62 | 0.55 | 0.13 | 33/53 | 128/253 | 47.4 |
| logBAY | 0.14 | 0.84 | 0.69 | 50/53 | 189/253 | 21.9 |
| PHY | 0.71 | 0.70 | 0.45 | 50/53 | 129/253 | 41.5 |
Fig. 3Altitude profile of suitable area: This figure depicts the percentage of suitable area over the total area for each altitude class for a) PHY; b) logBAY and c) MaxEnt model. The black line represents the percentage of area in each corresponding altitude class
Descriptive statistics for the distribution of suitability values in Maasmechelen municipality, Belgium, for all three models
| Model | Avg suitability | Min suitability | Max suitability |
|---|---|---|---|
| MaxEnt | 0.46 | 0.03 | 0.70 |
| logBAY | 0.10 | 0.07 | 0.14 |
| PHY | 0.61 | 0.38 | 0.78 |
Fig. 4Potential spread of Aedes koreicus predicted through road network analysis: Areas with the same cost of invasion are displayed using a red-green-blue colour scale. The cost of invasion is expressed in years since the species’ introduction (2011). Cost of invasion is a function of the travelling distance from the introduction point based on the observed rate of shift of the invaded range centroid and the predicted habitat suitability. Major cities (green pushpins) and sampling locations (white circles) are also reported
Ranking of the 5 most important variables for MaxEnt model. We assigned a score ranging from 5 to 1 to the first 5 predictors for each of the three measurements of variable importance provided by MaxEnt. Afterwards, we summed the rank to provide an overall metric for variable importance
| PC | Rank contribution | Rank permutation | Rank training gain | Overall rank |
|---|---|---|---|---|
|
| 5 | 5 | 4 | 14 |
|
| 4 | 2 | 5 | 11 |
|
| 3 | 4 | 3 | 10 |
|
| 2 | 3 | 1 | 6 |
|
| 1 | − | 2 | 3 |