Literature DB >> 26841759

The role of mass transport in protein crystallization.

Juan Manuel García-Ruiz1, Fermín Otálora1, Alfonso García-Caballero1.   

Abstract

Mass transport takes place within the mesoscopic to macroscopic scale range and plays a key role in crystal growth that may affect the result of the crystallization experiment. The influence of mass transport is different depending on the crystallization technique employed, essentially because each technique reaches supersaturation in its own unique way. In the case of batch experiments, there are some complex phenomena that take place at the interface between solutions upon mixing. These transport instabilities may drastically affect the reproducibility of crystallization experiments, and different outcomes may be obtained depending on whether or not the drop is homogenized. In diffusion experiments with aqueous solutions, evaporation leads to fascinating transport phenomena. When a drop starts to evaporate, there is an increase in concentration near the interface between the drop and the air until a nucleation event eventually takes place. Upon growth, the weight of the floating crystal overcomes the surface tension and the crystal falls to the bottom of the drop. The very growth of the crystal then triggers convective flow and inhomogeneities in supersaturation values in the drop owing to buoyancy of the lighter concentration-depleted solution surrounding the crystal. Finally, the counter-diffusion technique works if, and only if, diffusive mass transport is assured. The technique relies on the propagation of a supersaturation wave that moves across the elongated protein chamber and is the result of the coupling of reaction (crystallization) and diffusion. The goal of this review is to convince protein crystal growers that in spite of the small volume of the typical protein crystallization setup, transport plays a key role in the crystal quality, size and phase in both screening and optimization experiments.

Keywords:  crystal growth; mass transport; protein crystallization

Mesh:

Substances:

Year:  2016        PMID: 26841759      PMCID: PMC4741189          DOI: 10.1107/S2053230X16000030

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  19 in total

1.  Experimental evidence for the stability of the depletion zone around a growing protein crystal under microgravity.

Authors:  F Otálora ; M L Novella ; J A Gavira ; B R Thomas ; J M García Ruiz
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2001-03

2.  An accurate numerical model for calculating the equilibration rate of a hanging-drop experiment.

Authors:  D J Diller; W G Hol
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-03

Review 3.  Protein crystallization by capillary counterdiffusion for applied crystallographic structure determination.

Authors:  Joseph D Ng; José A Gavira; Juan M García-Ruíz
Journal:  J Struct Biol       Date:  2003-04       Impact factor: 2.867

4.  Space-grown protein crystals are more useful for structure determination.

Authors:  Joseph D Ng
Journal:  Ann N Y Acad Sci       Date:  2002-10       Impact factor: 5.691

5.  Screening of protein crystallization conditions on a microfluidic chip using nanoliter-size droplets.

Authors:  Bo Zheng; L Spencer Roach; Rustem F Ismagilov
Journal:  J Am Chem Soc       Date:  2003-09-17       Impact factor: 15.419

6.  Initial evaluations of the reproducibility of vapor-diffusion crystallization.

Authors:  Janet Newman; Jian Xu; Michael C Willis
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-06-15

Review 7.  Crystal growth of proteins, nucleic acids, and viruses in gels.

Authors:  Bernard Lorber; Claude Sauter; Anne Théobald-Dietrich; Abel Moreno; Pascale Schellenberger; Marie-Claire Robert; Bernard Capelle; Sarah Sanglier; Noëlle Potier; Richard Giegé
Journal:  Prog Biophys Mol Biol       Date:  2009-12-11       Impact factor: 3.667

Review 8.  Counterdiffusion methods applied to protein crystallization.

Authors:  Fermín Otálora; José Antonio Gavira; Joseph D Ng; Juan Manuel García-Ruiz
Journal:  Prog Biophys Mol Biol       Date:  2009-12-16       Impact factor: 3.667

9.  Ab initio crystallographic structure determination of insulin from protein to electron density without crystal handling.

Authors:  José A Gavira; Diana Toh; Javier Lopéz-Jaramillo; Juan M García-Ruíz; Joseph D Ng
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-06-20

10.  Crystallization of biological macromolecules using agarose gel.

Authors:  Christian Biertümpfel; Jérôme Basquin; Dietrich Suck; Claude Sauter
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-09-26
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  1 in total

1.  Microgravity crystallization of perdeuterated tryptophan synthase for neutron diffraction.

Authors:  Victoria N Drago; Juliette M Devos; Matthew P Blakeley; V Trevor Forsyth; Andrey Y Kovalevsky; Constance A Schall; Timothy C Mueser
Journal:  NPJ Microgravity       Date:  2022-05-04       Impact factor: 4.415

  1 in total

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