Literature DB >> 26826681

Pioneer transcription factors, chromatin dynamics, and cell fate control.

Kenneth S Zaret1, Susan E Mango2.   

Abstract

Among the diverse transcription factors that are necessary to elicit changes in cell fate, both in embryonic development and in cellular reprogramming, a subset of factors are capable of binding to their target sequences on nucleosomal DNA and initiating regulatory events in silent chromatin. Such 'pioneer transcription factors' initiate cooperative interactions with other regulatory proteins to elicit changes in local chromatin structure. As a consequence of pioneer factor binding, the local chromatin can either become open and competent for activation, closed and repressed, or transcriptionally active. Understanding how pioneer factors initiate chromatin dynamics and how such can be blocked at heterochromatic sites provides insights into controlling cell fate transitions at will.
Copyright © 2015 Elsevier Ltd. All rights reserved.

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Year:  2016        PMID: 26826681      PMCID: PMC4914445          DOI: 10.1016/j.gde.2015.12.003

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  61 in total

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Authors:  D Chaya; T Hayamizu; M Bustin; K S Zaret
Journal:  J Biol Chem       Date:  2001-09-24       Impact factor: 5.157

2.  Crystal structure of a POU/HMG/DNA ternary complex suggests differential assembly of Oct4 and Sox2 on two enhancers.

Authors:  Attila Reményi; Katharina Lins; L Johan Nissen; Rolland Reinbold; Hans R Schöler; Matthias Wilmanns
Journal:  Genes Dev       Date:  2003-08-15       Impact factor: 11.361

3.  FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription.

Authors:  Mathieu Lupien; Jérôme Eeckhoute; Clifford A Meyer; Qianben Wang; Yong Zhang; Wei Li; Jason S Carroll; X Shirley Liu; Myles Brown
Journal:  Cell       Date:  2008-03-21       Impact factor: 41.582

4.  Crystal structure of the nucleosome core particle at 2.8 A resolution.

Authors:  K Luger; A W Mäder; R K Richmond; D F Sargent; T J Richmond
Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

Review 5.  Chromatin remodelling during development.

Authors:  Lena Ho; Gerald R Crabtree
Journal:  Nature       Date:  2010-01-28       Impact factor: 49.962

6.  Hierarchical mechanisms for direct reprogramming of fibroblasts to neurons.

Authors:  Orly L Wapinski; Thomas Vierbuchen; Kun Qu; Qian Yi Lee; Soham Chanda; Daniel R Fuentes; Paul G Giresi; Yi Han Ng; Samuele Marro; Norma F Neff; Daniela Drechsel; Ben Martynoga; Diogo S Castro; Ashley E Webb; Thomas C Südhof; Anne Brunet; Francois Guillemot; Howard Y Chang; Marius Wernig
Journal:  Cell       Date:  2013-10-24       Impact factor: 41.582

7.  Study of FoxA pioneer factor at silent genes reveals Rfx-repressed enhancer at Cdx2 and a potential indicator of esophageal adenocarcinoma development.

Authors:  Jason A Watts; Chaolin Zhang; Andres J Klein-Szanto; Jay D Kormish; Jian Fu; Michael Q Zhang; Kenneth S Zaret
Journal:  PLoS Genet       Date:  2011-09-15       Impact factor: 5.917

8.  Temporal regulation of foregut development by HTZ-1/H2A.Z and PHA-4/FoxA.

Authors:  Dustin L Updike; Susan E Mango
Journal:  PLoS Genet       Date:  2006-08-11       Impact factor: 5.917

Review 9.  Pioneer transcription factors in cell reprogramming.

Authors:  Makiko Iwafuchi-Doi; Kenneth S Zaret
Journal:  Genes Dev       Date:  2014-12-15       Impact factor: 11.361

10.  Integrative analysis of 111 reference human epigenomes.

Authors:  Anshul Kundaje; Wouter Meuleman; Jason Ernst; Misha Bilenky; Angela Yen; Alireza Heravi-Moussavi; Pouya Kheradpour; Zhizhuo Zhang; Jianrong Wang; Michael J Ziller; Viren Amin; John W Whitaker; Matthew D Schultz; Lucas D Ward; Abhishek Sarkar; Gerald Quon; Richard S Sandstrom; Matthew L Eaton; Yi-Chieh Wu; Andreas R Pfenning; Xinchen Wang; Melina Claussnitzer; Yaping Liu; Cristian Coarfa; R Alan Harris; Noam Shoresh; Charles B Epstein; Elizabeta Gjoneska; Danny Leung; Wei Xie; R David Hawkins; Ryan Lister; Chibo Hong; Philippe Gascard; Andrew J Mungall; Richard Moore; Eric Chuah; Angela Tam; Theresa K Canfield; R Scott Hansen; Rajinder Kaul; Peter J Sabo; Mukul S Bansal; Annaick Carles; Jesse R Dixon; Kai-How Farh; Soheil Feizi; Rosa Karlic; Ah-Ram Kim; Ashwinikumar Kulkarni; Daofeng Li; Rebecca Lowdon; GiNell Elliott; Tim R Mercer; Shane J Neph; Vitor Onuchic; Paz Polak; Nisha Rajagopal; Pradipta Ray; Richard C Sallari; Kyle T Siebenthall; Nicholas A Sinnott-Armstrong; Michael Stevens; Robert E Thurman; Jie Wu; Bo Zhang; Xin Zhou; Arthur E Beaudet; Laurie A Boyer; Philip L De Jager; Peggy J Farnham; Susan J Fisher; David Haussler; Steven J M Jones; Wei Li; Marco A Marra; Michael T McManus; Shamil Sunyaev; James A Thomson; Thea D Tlsty; Li-Huei Tsai; Wei Wang; Robert A Waterland; Michael Q Zhang; Lisa H Chadwick; Bradley E Bernstein; Joseph F Costello; Joseph R Ecker; Martin Hirst; Alexander Meissner; Aleksandar Milosavljevic; Bing Ren; John A Stamatoyannopoulos; Ting Wang; Manolis Kellis
Journal:  Nature       Date:  2015-02-19       Impact factor: 69.504

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  130 in total

Review 1.  Mechanisms regulating zygotic genome activation.

Authors:  Katharine N Schulz; Melissa M Harrison
Journal:  Nat Rev Genet       Date:  2019-04       Impact factor: 53.242

Review 2.  Shaping Gene Expression by Landscaping Chromatin Architecture: Lessons from a Master.

Authors:  Vittorio Sartorelli; Pier Lorenzo Puri
Journal:  Mol Cell       Date:  2018-06-07       Impact factor: 17.970

3.  Live-cell imaging reveals the interplay between transcription factors, nucleosomes, and bursting.

Authors:  Benjamin T Donovan; Anh Huynh; David A Ball; Heta P Patel; Michael G Poirier; Daniel R Larson; Matthew L Ferguson; Tineke L Lenstra
Journal:  EMBO J       Date:  2019-05-17       Impact factor: 11.598

4.  Control of p53-dependent transcription and enhancer activity by the p53 family member p63.

Authors:  Gizem Karsli Uzunbas; Faraz Ahmed; Morgan A Sammons
Journal:  J Biol Chem       Date:  2019-05-21       Impact factor: 5.157

Review 5.  The interplay of epigenetic marks during stem cell differentiation and development.

Authors:  Yaser Atlasi; Hendrik G Stunnenberg
Journal:  Nat Rev Genet       Date:  2017-08-14       Impact factor: 53.242

Review 6.  Do Memory CD4 T Cells Keep Their Cell-Type Programming: Plasticity versus Fate Commitment? Epigenome: A Dynamic Vehicle for Transmitting and Recording Cytokine Signaling.

Authors:  John L Johnson; Golnaz Vahedi
Journal:  Cold Spring Harb Perspect Biol       Date:  2018-03-01       Impact factor: 10.005

Review 7.  Floral Organogenesis: When Knowing Your ABCs Is Not Enough.

Authors:  Bennett Thomson; Beibei Zheng; Frank Wellmer
Journal:  Plant Physiol       Date:  2016-10-27       Impact factor: 8.340

8.  A protein activity assay to measure global transcription factor activity reveals determinants of chromatin accessibility.

Authors:  Bei Wei; Arttu Jolma; Biswajyoti Sahu; Lukas M Orre; Fan Zhong; Fangjie Zhu; Teemu Kivioja; Inderpreet Sur; Janne Lehtiö; Minna Taipale; Jussi Taipale
Journal:  Nat Biotechnol       Date:  2018-05-21       Impact factor: 54.908

9.  A nucleosome-free region locally abrogates histone H1-dependent restriction of linker DNA accessibility in chromatin.

Authors:  Laxmi Narayan Mishra; Jeffrey J Hayes
Journal:  J Biol Chem       Date:  2018-10-29       Impact factor: 5.157

Review 10.  Epigenetic plasticity and the hallmarks of cancer.

Authors:  William A Flavahan; Elizabeth Gaskell; Bradley E Bernstein
Journal:  Science       Date:  2017-07-21       Impact factor: 47.728

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