| Literature DB >> 26814845 |
Christophe Narth1, Louis Lagardère2, Étienne Polack1,3, Nohad Gresh1,4, Qiantao Wang5, David R Bell5, Joshua A Rackers6, Jay W Ponder7, Pengyu Y Ren5, Jean-Philip Piquemal1.
Abstract
We propose a general coupling of the Smooth Particle Mesh Ewald SPME approach for distributed multipoles to a short-range charge penetration correction modifying the charge-charge, charge-dipole and charge-quadrupole energies. Such an approach significantly improves electrostatics when compared to ab initio values and has been calibrated on Symmetry-Adapted Perturbation Theory reference data. Various neutral molecular dimers have been tested and results on the complexes of mono- and divalent cations with a water ligand are also provided. Transferability of the correction is adressed in the context of the implementation of the AMOEBA and SIBFA polarizable force fields in the TINKER-HP software. As the choices of the multipolar distribution are discussed, conclusions are drawn for the future penetration-corrected polarizable force fields highlighting the mandatory need of non-spurious procedures for the obtention of well balanced and physically meaningful distributed moments. Finally, scalability and parallelism of the short-range corrected SPME approach are addressed, demonstrating that the damping function is computationally affordable and accurate for molecular dynamics simulations of complex bio- or bioinorganic systems in periodic boundary conditions.Entities:
Keywords: electrostatics; energy decomposition analysis; polarizable force fields
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Year: 2016 PMID: 26814845 PMCID: PMC4730919 DOI: 10.1002/jcc.24257
Source DB: PubMed Journal: J Comput Chem ISSN: 0192-8651 Impact factor: 3.376