Literature DB >> 26803397

Cross-trial prediction of treatment outcome in depression: a machine learning approach.

Adam Mourad Chekroud1, Ryan Joseph Zotti2, Zarrar Shehzad3, Ralitza Gueorguieva4, Marcia K Johnson3, Madhukar H Trivedi5, Tyrone D Cannon6, John Harrison Krystal7, Philip Robert Corlett7.   

Abstract

BACKGROUND: Antidepressant treatment efficacy is low, but might be improved by matching patients to interventions. At present, clinicians have no empirically validated mechanisms to assess whether a patient with depression will respond to a specific antidepressant. We aimed to develop an algorithm to assess whether patients will achieve symptomatic remission from a 12-week course of citalopram.
METHODS: We used patient-reported data from patients with depression (n=4041, with 1949 completers) from level 1 of the Sequenced Treatment Alternatives to Relieve Depression (STAR*D; ClinicalTrials.gov, number NCT00021528) to identify variables that were most predictive of treatment outcome, and used these variables to train a machine-learning model to predict clinical remission. We externally validated the model in the escitalopram treatment group (n=151) of an independent clinical trial (Combining Medications to Enhance Depression Outcomes [COMED]; ClinicalTrials.gov, number NCT00590863).
FINDINGS: We identified 25 variables that were most predictive of treatment outcome from 164 patient-reportable variables, and used these to train the model. The model was internally cross-validated, and predicted outcomes in the STAR*D cohort with accuracy significantly above chance (64·6% [SD 3·2]; p<0·0001). The model was externally validated in the escitalopram treatment group (N=151) of COMED (accuracy 59·6%, p=0.043). The model also performed significantly above chance in a combined escitalopram-buproprion treatment group in COMED (n=134; accuracy 59·7%, p=0·023), but not in a combined venlafaxine-mirtazapine group (n=140; accuracy 51·4%, p=0·53), suggesting specificity of the model to underlying mechanisms.
INTERPRETATION: Building statistical models by mining existing clinical trial data can enable prospective identification of patients who are likely to respond to a specific antidepressant. FUNDING: Yale University.
Copyright © 2016 Elsevier Ltd. All rights reserved.

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Year:  2016        PMID: 26803397     DOI: 10.1016/S2215-0366(15)00471-X

Source DB:  PubMed          Journal:  Lancet Psychiatry        ISSN: 2215-0366            Impact factor:   27.083


  147 in total

1.  Improving risk prediction for depression via Elastic Net regression - Results from Korea National Health Insurance Services Data.

Authors:  Min-Hyung Kim; Samprit Banerjee; Sang Min Park; Jyotishman Pathak
Journal:  AMIA Annu Symp Proc       Date:  2017-02-10

2.  Prediction of Future Chronic Opioid Use Among Hospitalized Patients.

Authors:  S L Calcaterra; S Scarbro; M L Hull; A D Forber; I A Binswanger; K L Colborn
Journal:  J Gen Intern Med       Date:  2018-02-05       Impact factor: 5.128

Review 3.  [Big data approaches in psychiatry: examples in depression research].

Authors:  D Bzdok; T M Karrer; U Habel; F Schneider
Journal:  Nervenarzt       Date:  2018-08       Impact factor: 1.214

4.  How founding a company compares to graduate school.

Authors:  Adam Chekroud
Journal:  Nature       Date:  2020-01-27       Impact factor: 49.962

5.  Need for Outcome Scenario Analysis of Clinical Trials in Diabetes.

Authors:  Rosa Garcia-Verdugo; Michael Erbach; Oliver Schnell
Journal:  J Diabetes Sci Technol       Date:  2016-10-05

6.  Augmentation of Physician Assessments with Multi-Omics Enhances Predictability of Drug Response: A Case Study of Major Depressive Disorder.

Authors:  Arjun Athreya; Ravishankar Iyer; Drew Neavin; Liewei Wang; Richard Weinshilboum; Rima Kaddurah-Daouk; John Rush; Mark Frye; William Bobo
Journal:  IEEE Comput Intell Mag       Date:  2018-07-20       Impact factor: 11.356

Review 7.  Artificial Intelligence for Mental Health and Mental Illnesses: an Overview.

Authors:  Sarah Graham; Colin Depp; Ellen E Lee; Camille Nebeker; Xin Tu; Ho-Cheol Kim; Dilip V Jeste
Journal:  Curr Psychiatry Rep       Date:  2019-11-07       Impact factor: 5.285

8.  Postoperative bleeding risk prediction for patients undergoing colorectal surgery.

Authors:  David Chen; Naveed Afzal; Sunghwan Sohn; Elizabeth B Habermann; James M Naessens; David W Larson; Hongfang Liu
Journal:  Surgery       Date:  2018-07-20       Impact factor: 3.982

Review 9.  Data Mining Algorithms and Techniques in Mental Health: A Systematic Review.

Authors:  Susel Góngora Alonso; Isabel de la Torre-Díez; Sofiane Hamrioui; Miguel López-Coronado; Diego Calvo Barreno; Lola Morón Nozaleda; Manuel Franco
Journal:  J Med Syst       Date:  2018-07-21       Impact factor: 4.460

10.  The clinical characterization of the adult patient with depression aimed at personalization of management.

Authors:  Mario Maj; Dan J Stein; Gordon Parker; Mark Zimmerman; Giovanni A Fava; Marc De Hert; Koen Demyttenaere; Roger S McIntyre; Thomas Widiger; Hans-Ulrich Wittchen
Journal:  World Psychiatry       Date:  2020-10       Impact factor: 49.548

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