Literature DB >> 26795478

Methods for Determining the Cellular Functions of Vimentin Intermediate Filaments.

Karen M Ridge1, Dale Shumaker2, Amélie Robert3, Caroline Hookway3, Vladimir I Gelfand3, Paul A Janmey4, Jason Lowery5, Ming Guo6, David A Weitz7, Edward Kuczmarski3, Robert D Goldman2.   

Abstract

The type III intermediate filament protein vimentin was once thought to function mainly as a static structural protein in the cytoskeleton of cells of mesenchymal origin. Now, however, vimentin is known to form a dynamic, flexible network that plays an important role in a number of signaling pathways. Here, we describe various methods that have been developed to investigate the cellular functions of the vimentin protein and intermediate filament network, including chemical disruption, photoactivation and photoconversion, biolayer interferometry, soluble bead binding assay, three-dimensional substrate experiments, collagen gel contraction, optical-tweezer active microrheology, and force spectrum microscopy. Using these techniques, the contributions of vimentin to essential cellular processes can be probed in ever further detail.
Copyright © 2016 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Biolayer interferometry; Collagen gel contraction; Force spectrum microscopy; Gigaxonin; Optical tweezers; Photoactivation; Photoconversion; Three-dimensional substrate; Vimentin; Withaferin A

Mesh:

Substances:

Year:  2015        PMID: 26795478      PMCID: PMC4851442          DOI: 10.1016/bs.mie.2015.09.036

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  73 in total

1.  Origins of elasticity in intermediate filament networks.

Authors:  Yi-Chia Lin; Norman Y Yao; Chase P Broedersz; Harald Herrmann; Fred C Mackintosh; David A Weitz
Journal:  Phys Rev Lett       Date:  2010-02-01       Impact factor: 9.161

Review 2.  Intermediate filament proteins and their associated diseases.

Authors:  M Bishr Omary; Pierre A Coulombe; W H Irwin McLean
Journal:  N Engl J Med       Date:  2004-11-11       Impact factor: 91.245

3.  Characterization and development of photoactivatable fluorescent proteins for single-molecule-based superresolution imaging.

Authors:  Siyuan Wang; Jeffrey R Moffitt; Graham T Dempsey; X Sunney Xie; Xiaowei Zhuang
Journal:  Proc Natl Acad Sci U S A       Date:  2014-05-27       Impact factor: 11.205

4.  Structure and assembly properties of the intermediate filament protein vimentin: the role of its head, rod and tail domains.

Authors:  H Herrmann; M Häner; M Brettel; S A Müller; K N Goldie; B Fedtke; A Lustig; W W Franke; U Aebi
Journal:  J Mol Biol       Date:  1996-12-20       Impact factor: 5.469

5.  A novel type of regulation of the vimentin intermediate filament cytoskeleton by a Golgi protein.

Authors:  Ya-Sheng Gao; Alice Vrielink; Robert MacKenzie; Elizabeth Sztul
Journal:  Eur J Cell Biol       Date:  2002-07       Impact factor: 4.492

6.  The stiffness of rabbit skeletal actomyosin cross-bridges determined with an optical tweezers transducer.

Authors:  C Veigel; M L Bartoo; D C White; J C Sparrow; J E Molloy
Journal:  Biophys J       Date:  1998-09       Impact factor: 4.033

7.  Desmin and vimentin intermediate filament networks: their viscoelastic properties investigated by mechanical rheometry.

Authors:  Michael Schopferer; Harald Bär; Bernhard Hochstein; Sarika Sharma; Norbert Mücke; Harald Herrmann; Norbert Willenbacher
Journal:  J Mol Biol       Date:  2009-03-10       Impact factor: 5.469

8.  Polyacrylamide hydrogels for cell mechanics: steps toward optimization and alternative uses.

Authors:  Casey E Kandow; Penelope C Georges; Paul A Janmey; Karen A Beningo
Journal:  Methods Cell Biol       Date:  2007       Impact factor: 1.441

9.  Steady state dynamics of intermediate filament networks.

Authors:  K L Vikstrom; S S Lim; R D Goldman; G G Borisy
Journal:  J Cell Biol       Date:  1992-07       Impact factor: 10.539

10.  Rapid movements of vimentin on microtubule tracks: kinesin-dependent assembly of intermediate filament networks.

Authors:  V Prahlad; M Yoon; R D Moir; R D Vale; R D Goldman
Journal:  J Cell Biol       Date:  1998-10-05       Impact factor: 10.539

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  15 in total

1.  The Cell as Matter: Connecting Molecular Biology to Cellular Functions.

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Journal:  Matter       Date:  2021-06-02

2.  Impact of N-Terminal Tags on De Novo Vimentin Intermediate Filament Assembly.

Authors:  Saima Usman; Hebah Aldehlawi; Thuan Khanh Ngoc Nguyen; Muy-Teck Teh; Ahmad Waseem
Journal:  Int J Mol Sci       Date:  2022-06-06       Impact factor: 6.208

3.  Gigaxonin glycosylation regulates intermediate filament turnover and may impact giant axonal neuropathy etiology or treatment

Authors:  Po-Han Chen; Jimin Hu; Jianli Wu; Duc T Huynh; Timothy J Smith; Samuel Pan; Brittany J Bisnett; Alexander B Smith; Annie Lu; Brett M Condon; Jen-Tsan Chi; Michael Boyce
Journal:  JCI Insight       Date:  2019-11-26

4.  Increased expression of desmin and vimentin reduces bladder smooth muscle contractility via JNK2.

Authors:  Elham Javed; Chellappagounder Thangavel; Nagat Frara; Jagmohan Singh; Ipsita Mohanty; Joseph Hypolite; Ruth Birbe; Alan S Braverman; Robert B Den; Satish Rattan; Stephen A Zderic; Deepak A Deshpande; Raymond B Penn; Michael R Ruggieri; Samuel Chacko; Ettickan Boopathi
Journal:  FASEB J       Date:  2019-12-16       Impact factor: 5.191

5.  Site-specific glycosylation regulates the form and function of the intermediate filament cytoskeleton.

Authors:  Heather J Tarbet; Lee Dolat; Timothy J Smith; Brett M Condon; E Timothy O'Brien; Raphael H Valdivia; Michael Boyce
Journal:  Elife       Date:  2018-03-07       Impact factor: 8.140

6.  A New Pathway Promotes Adaptation of Human Glioblastoma Cells to Glucose Starvation.

Authors:  Alberto Azzalin; Francesca Brambilla; Eloisa Arbustini; Katia Basello; Attilio Speciani; Pierluigi Mauri; Paola Bezzi; Lorenzo Magrassi
Journal:  Cells       Date:  2020-05-18       Impact factor: 6.600

7.  Assessment of epithelial-mesenchymal transition signatures in oral submucous fibrosis.

Authors:  R Shesha Prasad; Anuradha Pai; K Shyamala; Abhishek Bhadranna; Sadhana Shenoy; Anisha Yaji
Journal:  J Oral Maxillofac Pathol       Date:  2019 May-Aug

8.  Combination of Withaferin-A and CAPE Provides Superior Anticancer Potency: Bioinformatics and Experimental Evidence to Their Molecular Targets and Mechanism of Action.

Authors:  Anissa Nofita Sari; Priyanshu Bhargava; Jaspreet Kaur Dhanjal; Jayarani F Putri; Navaneethan Radhakrishnan; Seyad Shefrin; Yoshiyuki Ishida; Keiji Terao; Durai Sundar; Sunil C Kaul; Renu Wadhwa
Journal:  Cancers (Basel)       Date:  2020-05-05       Impact factor: 6.639

9.  Development of a Stromal Microenvironment Experimental Model Containing Proto-Myofibroblast Like Cells and Analysis of Its Crosstalk with Melanoma Cells: A New Tool to Potentiate and Stabilize Tumor Suppressor Phenotype of Dermal Myofibroblasts.

Authors:  Angelica Avagliano; Maria Rosaria Ruocco; Rosarita Nasso; Federica Aliotta; Gennaro Sanità; Antonino Iaccarino; Claudio Bellevicine; Gaetano Calì; Giuseppe Fiume; Stefania Masone; Mariorosario Masullo; Stefania Montagnani; Alessandro Arcucci
Journal:  Cells       Date:  2019-11-14       Impact factor: 6.600

10.  A subtype of cancer-associated fibroblasts with lower expression of alpha-smooth muscle actin suppresses stemness through BMP4 in oral carcinoma.

Authors:  Ankit Kumar Patel; Kavya Vipparthi; Venu Thatikonda; Indu Arun; Samsiddhi Bhattacharjee; Rajeev Sharan; Pattatheyil Arun; Sandeep Singh
Journal:  Oncogenesis       Date:  2018-10-05       Impact factor: 7.485

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