| Literature DB >> 26795201 |
Jie Bao1, Xiao-jie Wang2, Zong-fu Mao1.
Abstract
BACKGROUND: Alzheimer disease (AD) has become an epidemic within the growing elderly population and effective therapies of AD have not been discovered. Genetic factors accounted for over 70% of the incidence of AD and the disease-related polymorphisms are located on chromosome 19, which is one of several prominent chromosomes related to the development of AD. Many inconsistent associations between polymorphisms in ABCA7, CD33, and TOMM40 genes and the susceptibility to AD have been suggested by several independent studies. MATERIAL/Entities:
Mesh:
Substances:
Year: 2016 PMID: 26795201 PMCID: PMC4727495 DOI: 10.12659/msm.895622
Source DB: PubMed Journal: Med Sci Monit ISSN: 1234-1010
Figure 1The forest plot of ABCA7 genetic variation with AD.
Figure 2The forest plot of CD33 genetic variation with AD.
Figure 3The forest plot of TOMM40 genetic variation with AD.
Meta-analysis of four polymorphisms and AD susceptibility.
| Gene | SNP | OR (95% CI) | TAU2 | I2 | Ethnicity | ||||
|---|---|---|---|---|---|---|---|---|---|
| Caucasians | Asians | ||||||||
| rs3764650 | 1.20 (1.14–1.26) | <0.001 | 0.002 | 20.42% | 0.3615 | 0.433 | 1.24 (1.19–1.31) | 1.10 (1.01–1.19) | |
| rs3865444 | 0.94 (0.90–0.98) | 0.003 | 0.007 | 63.91% | <0.0001 | 0.794 | 0.93 (0.90–0.95) | 0.86 (0.58–1.27) | |
| rs157580 | 0.62 (0.57–0.66) | <0.001 | 0.009 | 61.97% | 0.0031 | 0.945 | 0.61 (0.56–0.66) | 0.65 (0.56–0.73) | |
| rs2075650 | 2.87 (2.46–3.34) | <0.001 | 0.067 | 88.05% | <0.0001 | 0.233 | 2.84 (2.54–3.13) | 2.45 (0.45–4.45) | |
Pooled odds ratios and 95% confidence intervals
Figure 4Funnel plot for publication bias of all included studies by genetic mutations.
Characteristics of included studies for ABCA7 gene.
| No. | First Author | Year | Country | Ethnicity | Case | Control | OR (95% CI) | |
|---|---|---|---|---|---|---|---|---|
| rs3764650 T>G | 01 | Lambert | 2009 | France | Caucasians | 2025 | 5328 | 1.29 (1.15–1.45) |
| 02 | Harold | 2009 | UK/Ireland | Caucasians | 2226 | 4704 | 1.29 (1.15–1.45) | |
| 03 | Harold | 2009 | Germany | Caucasians | 555 | 824 | 0.98 (0.76–1.27) | |
| 04 | Harold | 2009 | USA | Caucasians | 551 | 960 | 1.20 (0.94–1.54) | |
| 06 | Hollingworth (ADNI) | 2011 | USA | Caucasians | 151 | 177 | 1.01 (0.58–1.76) | |
| 07 | Hollingworth (GERAD2) | 2011 | UK | Caucasians | 3262 | 3320 | 1.32 (1.15–1.52) | |
| 09 | Hollingworth (deCODE) | 2011 | Iceland | Caucasians | 925 | 612 | 1.23 (0.93–1.63) | |
| 10 | Hollingworth (AD-IG) | 2011 | USA | Caucasians | 709 | 971 | 1.15 (0.83–1.59) | |
| 11 | Hollingworth (EADI1) | 2011 | France | Caucasians | 2751 | 2620 | 1.31 (1.15–1.49) | |
| 12 | Hollingworth (CHARGE) | 2011 | Netherlands | Caucasians | 1239 | 10813 | 1.09 (0.92–1.29) | |
| 13 | Hollingworth (MAYO2) | 2011 | USA | Caucasians | 2490 | 4114 | 1.24 (1.10–1.40) | |
| 14 | Tan | 2012 | China | Asians | 612 | 612 | 1.04 (0.88–1.24) | |
| 15 | Chung | 2013 | Korea | Asians | 290 | 554 | 1.05 (0.85–1.29) | |
| 16 | Miyashita | 2013 | Japan | Asians | 891 | 844 | 1.13 (1.01–1.26) | |
| 17 | Carrasquillo | 2014 | America | Caucasians | 132 | 2486 | 1.08 (0.69–1.69) | |
| 18 | Liu | 2014 | China | Asians | 350 | 283 | 1.10 (0.87–1.40) | |
| 19 | Omoumi | 2014 | Canada | Caucasians | 580 | 524 | 1.32 (0.97–1.80) |
Characteristics of included studies for CD33 gene.
| No. | First Author | Year | Country | Ethnicity | Case | Control | OR (95% CI) | |
|---|---|---|---|---|---|---|---|---|
| rs3965444 C>A | 01 | Logue(Logue) | 2011 | USA | Caucasians | 513 | 496 | 0.95 (0.70–1.29) |
| 02 | Hollingworth(GERAD1) | 2011 | Europe | Caucasians | 3333 | 1225 | 0.91 (0.82–1.00) | |
| 03 | Hollingworth(EADI1) | 2011 | Europe | Caucasians | 2025 | 5328 | 0.89 (0.82–0.99) | |
| 04 | Hollingworth(deCODE) | 2011 | Europe | Caucasians | 925 | 612 | 0.85 (0.68–1.04) | |
| 05 | Naj(ADGC-GWAS) | 2011 | USA | Caucasians | 8309 | 7366 | 0.88 (0.84–0.93) | |
| 06 | Naj(ADGC-REP) | 2011 | USA | Caucasians | 3531 | 3565 | 0.92 (0.85–0.99) | |
| 07 | Carrasquillo(Jacksonville) | 2011 | USA | Caucasians | 492 | 920 | 0.91 (0.77–1.08) | |
| 08 | Carrasquillo(Rochester) | 2011 | USA | Caucasians | 312 | 1577 | 0.93 (0.77–1.12) | |
| 09 | Carrasquillo(Autopsy) | 2011 | USA | Caucasians | 298 | 97 | 0.90 (0.64–1.27) | |
| 10 | Carrasquillo(Norway) | 2011 | Europe | Caucasians | 327 | 541 | 0.98 (0.80–1.21) | |
| 11 | Carrasquillo(Poland) | 2011 | Europe | Caucasians | 467 | 187 | 1.20 (0.92–1.57) | |
| 12 | Carrasquillo(ARUK) | 2011 | Europe | Caucasians | 642 | 730 | 0.95 (0.81–1.11) | |
| 13 | Deng | 2012 | China | Asians | 190 | 193 | 0.48 (0.35–0.66) | |
| 14 | Chung | 2013 | Korea | Asians | 290 | 554 | 0.70 (0.53–0.92) | |
| 15 | Tan | 2013 | China | Asians | 612 | 612 | 1.44 (1.18–1.76) | |
| 16 | Lambert(ADGC) | 2013 | Europe | Caucasians | 10273 | 10892 | 0.89 (0.86–0.93) | |
| 17 | Lambert(CHARGE) | 2013 | Europe | Caucasians | 1315 | 12968 | 1.00 (0.92–1.10) | |
| 18 | Lambert(EADI) | 2013 | Europe | Caucasians | 2243 | 6017 | 0.90 (0.83–0.97) | |
| 19 | Lambert(GERAD) | 2013 | Europe | Caucasians | 3177 | 7277 | 0.89 (0.77–1.02) | |
| 20 | Lambert | 2013 | Austria | Caucasians | 210 | 829 | 1.08 (0.82–1.42) | |
| 21 | Lambert | 2013 | Belgium | Caucasians | 878 | 661 | 0.95 (0.79–1.14) | |
| 22 | Lambert | 2013 | Finland | Caucasians | 422 | 562 | 1.08 (0.89–1.30) | |
| 23 | Lambert | 2013 | Germany | Caucasians | 972 | 2378 | 1.00 (0.89–1.13) | |
| 24 | Lambert | 2013 | Greece | Caucasians | 256 | 229 | 0.79 (0.52–1.20) | |
| 25 | Lambert | 2013 | Hungary | Caucasians | 125 | 100 | 0.94 (0.60–1.47) | |
| 26 | Lambert | 2013 | Italy | Caucasians | 1729 | 720 | 1.12 (0.97–1.30) | |
| 27 | Lambert | 2013 | Spain | Caucasians | 2121 | 1921 | 0.94 (0.85–1.04) | |
| 28 | Lambert | 2013 | Sweden | Caucasians | 797 | 1506 | 0.99 (0.87–1.12) | |
| 29 | Lambert | 2013 | UK | Caucasians | 490 | 1066 | 1.00 (0.84–1.19) | |
| 30 | Lambert | 2013 | USA | Caucasians | 572 | 1340 | 0.93 (0.80–1.09) | |
| 31 | Miyashita | 2013 | Japan | Asians | 891 | 844 | 1.04 (0.92–1.18) | |
| 32 | Omoumi | 2014 | Canada | Caucasians | 580 | 524 | 0.76 (0.63–0.91) | |
| 33 | Walker | 2014 | USA | Caucasians | 97 | 96 | 1.13 (0.74–1.70) |
Characteristics of included studies for TOMM40 gene.
| No. | First Author | Year | Country | Ethnicity | Case | Control | OR (95% CI) | |
|---|---|---|---|---|---|---|---|---|
| rs157580 T>G | 01 | Takei | 2009 | Japan | Asians | 539 | 700 | 0.62 (0.53–0.73) |
| 02 | Harold | 2009 | UK/Ireland | Caucasians | 2227 | 4833 | 0.66 (0.61–0.71) | |
| 03 | Harold | 2009 | Germany | Caucasians | 555 | 823 | 0.67 (0.57–0.80) | |
| 04 | Harold | 2009 | USA | Caucasians | 1159 | 2187 | 0.57 (0.51–0.64) | |
| 05 | Carrasquillo(Stage I) | 2009 | USA | Caucasians | 844 | 1255 | 0.51 (0.45–0.59) | |
| 06 | Carrasquillo(Stage II) | 2009 | USA | Caucasians | 1547 | 1209 | 0.58 (0.52–0.65) | |
| 07 | Naj(Discovery) | 2010 | USA | Caucasians | 931 | 1104 | 0.66 (0.57–0.75) | |
| 08 | Naj(Replication) | 2010 | USA | Caucasians | 1242 | 1737 | 0.49 (0.36–0.68) | |
| 09 | Cervantes | 2011 | Spain | Caucasians | 955 | 869 | 0.74 (0.63–0.88) | |
| 10 | Valant | 2012 | USA | Caucasians | 308 | 215 | 0.48 (0.36–0.64) | |
| 11 | Ma | 2013 | China | Asians | 787 | 791 | 0.72 (0.57–0.92) | |
| 12 | Bagnoli | 2013 | Italy | Caucasians | 282 | 269 | 0.72 (0.57–0.92) | |
| rs2075650 G>A | 01 | Harold | 2009 | UK/Ireland | Caucasians | 2227 | 4832 | 2.48 (2.27–2.70) |
| 02 | Harold | 2009 | Germany | Caucasians | 555 | 824 | 2.31 (1.92–2.77) | |
| 03 | Harold | 2009 | USA | Caucasians | 1159 | 2187 | 2.68 (2.37–3.02) | |
| 04 | Carrasquillo(Stage I) | 2009 | USA | Caucasians | 844 | 1255 | 2.89 (2.49–3.36) | |
| 05 | Carrasquillo(Stage II) | 2009 | USA | Caucasians | 1547 | 1209 | 3.93 (3.39–4.57) | |
| 06 | Naj(Discovery) | 2010 | USA | Caucasians | 931 | 1104 | 2.96 (2.50–3.50) | |
| 07 | Naj(Replication) | 2010 | USA | Caucasians | 1242 | 1737 | 5.72 (3.63–9.02) | |
| 08 | Cervantes | 2011 | Spain | Caucasians | 955 | 869 | 2.94 (2.31–3.74) | |
| 09 | Valant | 2012 | USA | Caucasians | 308 | 215 | 3.39 (2.40–4.80) | |
| 10 | Schott | 2012 | UK | Caucasians | 114 | 102 | 4.30 (2.61–7.06) | |
| 11 | Ma | 2013 | China | Asians | 787 | 791 | 1.52 (1.19–1.94) | |
| 12 | Chung | 2013 | Korea | Asians | 290 | 554 | 3.57 (2.51–5.06) | |
| 13 | Bagnoli | 2013 | Italy | Caucasians | 280 | 272 | 2.10 (1.46–3.01) | |
| 14 | Omoumi | 2014 | Canada | Caucasians | 580 | 524 | 2.58 (2.04–3.25) |