| Literature DB >> 26784987 |
Katherine Sullivan1, Kimberly Cramer-Morales1, Daniel L McElroy2, David A Ostrov2, Kimberly Haas3, Wayne Childers3, Robert Hromas4, Tomasz Skorski1.
Abstract
It has been reported that inhibition of RAD52 either by specific shRNA or a small peptide aptamer induced synthetic lethality in tumor cell lines carrying BRCA1 and BRCA2 inactivating mutations. Molecular docking was used to screen two chemical libraries: 1) 1,217 FDA approved drugs, and 2) 139,735 drug-like compounds to identify candidates for interacting with DNA binding domain of human RAD52. Thirty six lead candidate compounds were identified that were predicted to interfere with RAD52 -DNA binding. Further biological testing confirmed that 9 of 36 candidate compounds were able to inhibit the binding of RAD52 to single-stranded DNA in vitro. Based on molecular binding combined with functional assays, we propose a model in which the active compounds bind to a critical "hotspot" in RAD52 DNA binding domain 1. In addition, one of the 9 active compounds, adenosine 5'-monophosphate (A5MP), and also its mimic 5-aminoimidazole-4-carboxamide ribonucleotide (AICAR) 5' phosphate (ZMP) inhibited RAD52 activity in vivo and exerted synthetic lethality against BRCA1 and BRCA2-mutated carcinomas. These data suggest that active, inhibitory RAD52 binding compounds could be further refined for efficacy and safety to develop drugs inducing synthetic lethality in tumors displaying deficiencies in BRCA1/2-mediated homologous recombination.Entities:
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Year: 2016 PMID: 26784987 PMCID: PMC4718542 DOI: 10.1371/journal.pone.0147230
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Small molecule inhibitors of RAD52 –ssDNA binding in vitro.
| Compound name | Chemical formula | Molecular weight | NCI number | Docking score |
|---|---|---|---|---|
| A5MP | C10H14N5O7P | 347.2237 | NSC20264 | -39.98 |
| N-(dichloroacetyl)aspartic acid (ACD/Name 4.0) | C6H7Cl2NO5 | 244.031 | NSC136607 | -39.91 |
| 2-(4-benzyl-2,5-dioxo-1-imidazolidinyl)-3-phenylpropanoic acid (ACD/Name 4.0) | C19H18N2O4 | 338.3622 | NSC609515 | -38.66 |
| ((1,3,9-trimethyl-2,6-dioxo-2,3,6,9-tetrahydro-1H-purin-8-yl)thio)acetic acid (ACD/Name 4.0) | C10H12N4O4S | 284.2892 | NSC400149 | -36.98 |
| 6-(1-aziridinyl)-7-methyl-5,8-dioxo-2,3,5,8-tetrahydro-1H-pyrrolo[1,2-a]benzimidazol-3-yl propionate (ACD/Name 4.0) | C16H17N3O4 | 315.328 | NSC651079 | -36.96 |
| 9-(5-(hydroxymethyl)tetrahydro-2-furanyl)-9H-purin-6-ol (ACD/Name 4.0) | C10H12N4O3 | 236.2298 | NSC612049 | -28.22 |
| u-19920a | C9H13N3O5 | 243.2188 | NSC63878 | -27.89 |
| 6-chloro-3-(dichloromethyl)-3,4-dihydro-2H-1,2,4-benzothiadiazine-7-sulfonamide 1,1-dioxide (ACD/Name 4.0) | C8H8Cl3N3O4S2 | 380.6479 | NSC61560 | -26.36 |
| 6-(((1-aminocyclohexyl)carbonyl)amino)-3,3-dimethyl-7-oxo-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid (ACD/Name 4.0) | C15H23N3O4S | 341.4244 | NSC88789 | -23.70 |
NSC20264, NSC63878, NSC61560, and NSC88789 are FDA approved drugs.