| Literature DB >> 26766790 |
Dingyuan Hu1, Daguan Zhang1, Shuzi Zheng1, Maodong Guo1, Xinxin Lin1, Yi Jiang1.
Abstract
OBJECTIVES: Dysbiosis of intestinal microbiota has been implicated in ulcerative colitis (UC). Fucosyltransferase (FUT) 2 and FUT3 determine expression of histo-blood group antigens in the gut and may affect the intestinal microbiota. We investigated the association between FUT2 and FUT3 polymorphisms and UC in Chinese patients.Entities:
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Year: 2016 PMID: 26766790 PMCID: PMC4713070 DOI: 10.1371/journal.pone.0146557
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Demographic characteristics of UC patients and the controls.
| Characteristics | UC | Controls | |
|---|---|---|---|
| Total number | 485 | 580 | |
| Sex (Female/Male) | 201/284 | 261/319 | 0.243 |
| Age (years) [mean (SD)] | 40.23(15.32) | 41.09(17.11) | 0.392 |
| Age of onset (years) [mean (SD)] | 39.05(14.47) | ||
| Smoking [n (%)] | 0.124 | ||
| Current or ex-smoker | 80(16.5) | 117(20.2) | |
| Never smoked | 405(83.5) | 463(79.8) | |
| Lesion location [n (%)] | |||
| Distal colitis | 311(64.1) | ||
| Extensive colitis | 174(35.9) | ||
| Severity of UC [n (%)] | |||
| Mild | 188(38.8) | ||
| Intermediate | 223(46.0) | ||
| Severe | 74(15.3) | ||
| Treatment [n (%)] | |||
| SASP/5-ASA | 408(84.1) | ||
| Prednisone | 118(24.3) | ||
| Antibiotics | 170(35.1) | ||
| Immunosuppressant | 9(1.9) | ||
| Infliximab | 0(0) | ||
| Colectomy | 2(0.4) |
UC, ulcerative colitis. SD, standard deviation. SASP, sulfasalazine. 5-ASA, 5-aminosalicylic acid.
Amplification and extension primers of FUT2 and FUT3.
| SNP | Amplification Primer (5′→3′) | Size (bp) | Conc.(μM) | Extension primer (5′→3′) | Size (bp) | Conc. (μM) |
|---|---|---|---|---|---|---|
| F:TCAACATCAAAGGCACTGGGACC R:TGGCGGAGGTGGTGGTAGAA | 338 | 2.5 | 38 | 1 | ||
| F:TCAACATCAAAGGCACTGGGACC R:TGGCGGAGGTGGTGGTAGAA | 338 | 2.5 | 58 | 1 | ||
| F:TCAACATCAAAGGCACTGGGACC R:TGGCGGAGGTGGTGGTAGAA | 338 | 2.5 | CACCGGCTACCCCTGCTCCT | 20 | 1 | |
| F:AAGAAACACACAGCCACCAGCAG R:AATGACCCTCACTCCTCTCTCCTCT | 137 | 1 | 51 | 1 | ||
| F:GGCTGAGTCCGGCTTCCAGTT R:TATCATGTCCAACCCTAAGTCACGC | 280 | 1 | 25 | 1 | ||
| F:AGGTCCCTAGCAGGCAAGTCTTC R:CTGGGCACTGGATTTCTGCAAGG | 254 | 1 | 44 | 1 |
Bold characters refer to the 5’ poly-thymidine tail.
Allelic and genotypic distributions of FUT2 and FUT3 between UC patients and the controls.
| Genotype/allele | Controls(580) n(%) | UC (485)n(%) | OR (95%CI) | |
|---|---|---|---|---|
| TT | 441(76.0) | 356(73.4) | ||
| TC | 126(21.7) | 114(23.5) | ||
| CC | 13(2.2) | 15(3.1) | ||
| TC+CC | 139(24.0) | 129(26.6) | 0.871(1.150–1.517) | 0.324 |
| allele C | 152(13.1) | 144(14.8) | 0.904(1.156–1.478) | 0.247 |
| AA | 160(27.6) | 155(32.0) | ||
| AT | 314(54.1) | 247(50.9) | ||
| TT | 106(18.3) | 83(17.1) | ||
| AT+TT | 420(72.4) | 330(68.0) | 0.623(0.811–1.056) | 0.119 |
| allele T | 526(45.3) | 413(42.6) | 0.753(0.894–1.061) | 0.200 |
| GG | 575(99.1) | 479(98.8) | ||
| GA | 5(0.9) | 6(1.2) | ||
| AA | 0(0) | 0(0) | ||
| GA+AA | 5(0.9) | 6(1.2) | 0.437(1.441–4.749) | 0.547 |
| allele A | 5(0.4) | 6(0.6) | 0.437(1.438–4.726) | 0.548 |
| TT | 332(57.2) | 281(57.9) | ||
| TG | 219(37.8) | 174(35.9) | ||
| GG | 29(5.0) | 30(6.2) | ||
| TG+GG | 248(42.8) | 204(42.1) | 0.761(0.972–1.241) | 0.819 |
| allele G | 277(23.9) | 234(24.1) | 0.830(1.013–1.237) | 0.895 |
| GG | 435(75.0) | 336(69.3) | ||
| GA | 136(23.4) | 133(27.4) | ||
| AA | 9(1.6) | 16(3.3) | ||
| GA+AA | 145(25.0) | 149(30.7) | 1.016(1.330–1.742) | 0.038 |
| allele A | 154(13.3) | 165(17.0) | 1.055(1.339–1.699) | 0.016 |
| TT | 471(81.2) | 406(83.7) | ||
| TA | 105(18.1) | 76(15.7) | ||
| AA | 4(0.7) | 3(0.6) | ||
| TA+AA | 109(18.8) | 79(16.3) | 0.611(0.841–1.156) | 0.286 |
| allele A | 113(9.7) | 82(8.5) | 0.635(0.856–1.153) | 0.305 |
Fig 1Linkage disequilibrium patterns of FUT2 and FUT3 in Chinese Han populations.
Numbers indicated the percentage of D' between 2 SNPs and in the dark area which have no digital represents D' = 1. Dark color indicated strong connection. Block 1 illustrated linkage disequilibrium in the 3 SNP in FUT3, and block 2 showed that rs281377 was in linkage disequilibrium with rs1047781 in FUT2.
Haplotype frequencies of FUT2 and FUT3 in patients with UC and the controls.
| Groups | ||||||
|---|---|---|---|---|---|---|
| TT | TA | CA | TGT | TAG | AGG | |
| UC | 0.425 | 0.427 | 0.148 | 0.733 | 0.158 | 0.071 |
| Controls | 0.450 | 0.419 | 0.127 | 0.752 | 0.129 | 0.093 |
No positive results were obtained for each haplotype of FUT2 and FUT3 between UC patients and the controls (all P >0.05). The haplotype frequencies lower than 0.030 were not presented in the table.
Association of FUT2 and FUT3 polymorphisms with clinical characteristics of UC patients.
| Genotype/Allele | Distal colitis(n = 311)(%) | Extensive colitis(n = 174)(%) | OR(95%CI) | |
|---|---|---|---|---|
| TT | 231(74.3) | 125(71.8) | ||
| TC+CC | 80(25.7) | 49(28.2) | 0.746(1.132–1.717) | 0.560 |
| T allele | 532(85.5) | 294(84.5) | ||
| C allele | 90(14.5) | 54(15.5) | 0.753(1.086–1.566) | 0.660 |
| AA | 90(28.9) | 65(37.4) | ||
| AT+TT | 221(71.1) | 109(62.6) | 0.461(0.683–1.012) | 0.057 |
| A allele | 346(55.6) | 211(60.6) | ||
| T allele | 276(44.4) | 137(39.4) | 0.623(0.814–1.063) | 0.131 |
| GG | 308(99.0) | 171(98.3) | ||
| GA+AA | 3(1.0) | 3(1.7) | 0.360(1.801–9.022) | 0.468 |
| G allele | 619(99.5) | 345(99.1) | ||
| A allele | 3(0.5) | 3(0.9) | 0.360(1.794–8.938) | 0.469 |
| TT | 162(52.1) | 119(68.4) | ||
| TG+GG | 149(47.9) | 55(31.6) | 0.340(0.503–0.742) | 0.000 |
| T allele | 450(72.3) | 286(82.2) | ||
| G allele | 172(27.7) | 62(17.8) | 0.409(0.567–0.786) | 0.001 |
| GG | 202(65.0) | 134(77.0) | ||
| GA+AA | 109(35.0) | 40(23.0) | 0.362(0.553–0.845) | 0.006 |
| G allele | 502(80.7) | 303(87.1) | ||
| A allele | 120(19.3) | 45(12.9) | 0.429(0.621–0.900) | 0.011 |
| TT | 253(81.4) | 153(87.9) | ||
| TA+AA | 58(18.6) | 21(12.1) | 0.350(0.599–1.025) | 0.060 |
| T allele | 562(90.4) | 326(93.7) | ||
| A allele | 60(9.6) | 22(6.3) | 0.381(0.632–1.050) | 0.074 |
The covariants also included sex, age of onset, smoking, severity of the disease. Nevertheless, these covariants did not affect the allelic and genotypic distributions of FUT2 and FUT3 in UC patients and the controls.
Fig 2Representative Sigmoid Colon specimens of UC patients and patients with benign colonic polyps.
Expression of Lewis a antigen (a-c) and Lewis b antigen (d-f) in the sigmiod specimens of inflammatory and adjacent non-inflammatory tissue of UC patients and normal controls. Samples a, b, d, e were derived from patient 5, described in Table 6. Samples c and f were derived from normal tissue of patients with benign colonic polyps. Immunohistochemical staining indicated increased expression of Lewis a antigen in the cryptic epithelium in inflammatory lesions from UC patients and normal mucosa from patients with benign colonic polyps (see arrows in a-c). Expression in the epithelium did not differ dramatically between UC patients and patients with benign colonic polyps. Expression of Lewis b antigen did not differ dramatically between the three groups (d–f).
Demographic characteristics of UC patients for immunohistochemistry study.
| Case | Sex | Age | Smo-king | Lesion location | Disease severity | FUT2 Genotype | FUT3 Genotype |
|---|---|---|---|---|---|---|---|
| 1 | Male | 56 | yes | Distal | Mild | FUT2 rs1047781 ATFUT2 rs281377 CT | FUT3 rs28362459 GTFUT3 rs3894326 AT |
| 2 | Female | 45 | no | Distal | Severe | FUT2 rs1047781 TT | Wild type |
| 3 | Female | 22 | no | Extensive | Mild | Wild type | FUT3 rs28362459 GT |
| 4 | Male | 42 | no | Distal | Mild | Wild type | Wild type |
| 5 | Male | 47 | yes | Distal | Intermediate | Wild type | Wild type |
| 6 | Female | 42 | no | Distal | Intermediate | Wild type | Wild type |
| 7 | Female | 51 | no | Extensive | Intermediate | Wild type | Wild type |