Literature DB >> 26766790

Association of Ulcerative Colitis with FUT2 and FUT3 Polymorphisms in Patients from Southeast China.

Dingyuan Hu1, Daguan Zhang1, Shuzi Zheng1, Maodong Guo1, Xinxin Lin1, Yi Jiang1.   

Abstract

OBJECTIVES: Dysbiosis of intestinal microbiota has been implicated in ulcerative colitis (UC). Fucosyltransferase (FUT) 2 and FUT3 determine expression of histo-blood group antigens in the gut and may affect the intestinal microbiota. We investigated the association between FUT2 and FUT3 polymorphisms and UC in Chinese patients.
METHODS: We genotyped FUT2 (rs281377, rs1047781 and rs601338) and FUT3 (rs28362459, rs3745635 and rs3894326) in 485 UC patients and 580 healthy controls using SNaPshot. We also evaluated expression of Lewis a and b antigens in the sigmoid colon of 7 UC patients and 7 patients with benign colonic polyps.
RESULTS: The frequencies of mutant allele (A) and genotype (GA+AA) in FUT3 (rs3745635) were higher in UC patients than controls (P = 0.016, 95%CI: 1.339-1.699; P = 0.038, 95%CI: 1.330-1.742, respectively). Stratified analyses revealed that the frequencies of mutant allele (G) and genotype (TG+GG) of FUT3 (rs28362459) were significantly lower in patients with extensive colitis than those with distal colitis (P<0.001, 95%CI: 0.503-0.742; P = 0.001, 95%CI: 0.567-0.786, respectively). Similar conclusions were drawn for the mutant allele (A) and genotype (GA+AA) of FUT3 (rs3745635) in patients with extensive colitis compared to those with distal colitis (P = 0.006, 95%CI: 0.553-0.845; P = 0.011, 95%CI: 0.621-0.900, respectively). Although expression of Lewis b antigen in the sigmoid colon did not differ between UC patients and controls, Lewis a antigen expression was higher in the cryptic epithelium of both inflammatory and non-inflammatory sigmoid colon of UC patients than controls (P = 0.028).
CONCLUSIONS: Our findings indicated that polymorphisms in FUT3 and its intestinal expression might be associated with UC pathogenesis.

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Year:  2016        PMID: 26766790      PMCID: PMC4713070          DOI: 10.1371/journal.pone.0146557

Source DB:  PubMed          Journal:  PLoS One        ISSN: 1932-6203            Impact factor:   3.240


Introduction

Inflammatory bowel diseases (IBDs) are a group of chronic and non-specific intestinal inflammatory disorders including ulcerative colitis (UC) and Crohn’s disease (CD). Although the precise etiology of IBDs is not yet fully understood, abnormal host-microbial interactions have been implicated in the pathogenesis of IBD. Mucosal and fecal bacterial analyses have suggested that patients with IBD have less complex commensal bacteria population and higher numbers of mucosal-associated bacteria than healthy individuals [1-3]. Animal models have also indicated that the composition of intestinal microbiota influenced intestinal inflammation [4]. The composition of intestinal microbiota appears to be influenced by host genetics. For instance, in patients with IBD carrying the NOD2 and ATG16L1 risk alleles the intestinal microbiota contains lower levels of Faecalibacterium and higher levels of Escherichia [5]. The intestinal microbiota can be influenced by Fucosyltransferase (FUT) 2 and FUT3, which control presentation of histo-blood group antigens (HBGA) on the gastrointestinal mucosa and in bodily secretions. HBGA, including ABH antigens and Lewis antigens, act not only as binding sites for intestinal microbes such as Helicobacter pylori, Campylobacter jejuni, Norovirus and rotavirus [6-8], but also a carbon source for microbes including Escherichia coli [9]. FUT2 is located in chromosome 19q13, while FUT3 is mapped to chromosome 19p13, a genomic region containing putative susceptibility loci (IBD6) for IBD [10,11]. FUT2 influences presentation of ABH antigens in the gastrointestinal mucosa and their secretion. In people that express functional FUT2, termed secretors, expression of ABH antigens is widespread in the stomach and small intestine, but decreases progressively from the proximal to distal colon [12,13]. Homozygotes for loss-of-function alleles in FUT2 lack expression of ABH antigens in the gastrointestinal mucosa and bodily secretions and account for approximately 20% of the world’s population [14-16]. FUT2(rs601338, G428A) is the most common polymorphism in FUT2 Caucasian nonsecretors. In Chinese and Japanese populations, however, FUT2 (rs601338, G428A) is rare and instead the more common missense mutation FUT2 (rs1047781, A385T) is responsible for dramatically decreased expression of ABH antigens [15-17]. Additionally, FUT2 (rs281377, T357C) has been identified as a common silent mutation in Chinese non-secretors [18, 19]. FUT3 encodes α-(1,3/4)-fucosyltransferase required to synthesize Lewis a antigens, and mostly utilizes the H antigen, determined by FUT2, as a substrate to synthesize Lewis b antigen. Lewis b is mainly expressed in the proximal colon, but not expressed in the distal colon, whereas Lewis a is uniformly distributed throughout the colon [13]. Studies in Chinese populations have demonstrated that (rs28362459, T59G), (rs3745635, G508A) and (rs3894326, T1067A) were the most common polymorphic loci of FUT3 [18]. Furthermore, mutations of FUT3 (rs3745635) and (rs3894326) inactivate the enzyme [10, 20], while mutation of FUT3 (rs28362459) reduces the availability of α-(1,3/4)-fucosyltransferase [10, 19]. In recent years, several studies have linked several nucleotide polymorphisms in FUT2 to intestinal microbiota composition [21] and predisposition to CD [22, 23], celiac disease [24], type 1 diabetes [25] and primary sclerosing cholangitis [26], highlighting the essential role of host gene-microbiota interaction in autoimmune diseases. However, the conclusions drawn about the influence of FUT2 on UC, were not consistent. Additionally, few studies have investigated the influence of FUT3 polymorphisms on UC. In this study, we investigated the prevalence of FUT2 and FUT3 polymorphisms in a cohort of UC patients and healthy controls in Southeast China. We also evaluated intestinal expression of Lewis a and b antigens to further investigate the role of these genes in pathogenesis of UC.

Materials and Methods

Subjects

Between January 2004 and May 2015, 485 consecutive UC patients were recruited from The Second Affiliated Hospital of Wenzhou Medical University in Wenzhou city, Zhejiang province of Southeast China. UC was diagnosed according to colonoscopic, histo-pathological, radiologic and clinical findings, following the Lennard-Jones Criteria [27]. The severity of UC were evaluated by Truelove & Witt Activity Index [28]. In the corresponding period, a total of 580 age- and sex-matched healthy controls were enrolled at the Health Examination Center of The Second Affiliated Hospital of Wenzhou Medical University. Patients with autoimmune diseases, tumors, and IBD family history were excluded. Demographic data was collected (Table 1). The age and sex distribution did not differ significantly between these UC patients and controls. Of these UC patients, we obtained specimens of inflammatory lesions in the sigmoid colon during colonoscopy examination. Specimens of the adjacent non-inflammatory mucosa were also obtained in five of the 7 patients. In seven patients with benign colonic polyps, confirmed by colonoscopy examination and pathology, specimens of normal sigmoid colon mucosa were obtained during colonoscopy. The study was carried out in line with the Treaty of Helsinki and was approved by Ethics Committee of The Second Affiliated Hospital of Wenzhou Medical University. Written informed consent was obtained from all UC patients and controls.
Table 1

Demographic characteristics of UC patients and the controls.

CharacteristicsUCControlsP
Total number485580
Sex (Female/Male)201/284261/3190.243
Age (years) [mean (SD)]40.23(15.32)41.09(17.11)0.392
Age of onset (years) [mean (SD)]39.05(14.47)
Smoking [n (%)]0.124
Current or ex-smoker80(16.5)117(20.2)
Never smoked405(83.5)463(79.8)
Lesion location [n (%)]
Distal colitis311(64.1)
Extensive colitis174(35.9)
Severity of UC [n (%)]
Mild188(38.8)
Intermediate223(46.0)
Severe74(15.3)
Treatment [n (%)]
SASP/5-ASA408(84.1)
Prednisone118(24.3)
Antibiotics170(35.1)
Immunosuppressant9(1.9)
Infliximab0(0)
Colectomy2(0.4)

UC, ulcerative colitis. SD, standard deviation. SASP, sulfasalazine. 5-ASA, 5-aminosalicylic acid.

UC, ulcerative colitis. SD, standard deviation. SASP, sulfasalazine. 5-ASA, 5-aminosalicylic acid.

Genomic DNA Extraction and Genotyping

Approximately 5 ml of peripheral blood was collected from each study subject in an EDTA tube. Genomic DNA was extracted from peripheral blood using the DNeasy Blood & Tissue kit (Qiagen GmbH), according to the manufacturer’s instructions. Genomic DNA was stored at 4°C for subsequent identification of genetic mutations. We employed a Multiplex SNaPshot assay (Applied Biosystems, California, USA) to examine FUT2 and FUT3 genotypes. First, 10 ng of genomic DNA was added to a 10 μl PCR mixture containing 20 μmol dNTPs (Promega, Wisconsin, USA), 0.5 U FastStart Taq DNA polymerase (Roche, Basel, Switzerland), 1μl 10×PCR buffer with MgCl2 (15 mmol/L) (Roche, Basel, Switzerland) and amplification primers with a specific final concentration (Table 2). The thermal cycler conditions for multiplex PCR amplification were as follows: initial denaturation, 95°C for 5 min, amplification for 35 cycles at 94°C for 30 s, 65°C for 30 s and 72°C for 1 min, followed by a final elongation step at 72°C for 10 min. Subsequently, the PCR products were examined by electrophoresis on a 2.5% agarose gel. Second, we purified the PCR product using a mix of 1.5 U shrimp alkaline phosphatase (SAP) (New England Biolabs, Massachusetts, USA) and 2 U Exonuclease I (TAKARA, Dalian, China) at 37°C for 80 min, then 85°C for 15 min. Third, the multiplex SNaPshot sequencing reactions were carried out in a final volume of 7 μl containing 2 μl of purified multiple PCR products, 1 μl SNaPshot Multiplex Mix, 1 μl 5×Sequencing buffer (Applied Biosystems) and 3 μl SNaPshot sequencing primers (the final concentrations are listed in Table 2). The thermal cycler conditions were: initial denaturation at 96°C for 1 min followed by 25 cycles at 96°C for 10 s, 52°C for 5 s and 60°C for 30 s. Then depuration of product was performed with 1 U SAP at 37°C for 60 min and 75°C for 15 min. Finally, 1.5 μl of SNaPshot products were genotyped using the ABI 3730 Genetic Analyzer before they were mixed with 8 μl HiDiTM formamide and 0.5 μl GeneScan-120LIZ size standard (Applied Biosystems). Data were analyzed using GeneMapper 4.0 (Applied Biosystems). In order to guarantee quality of the study, about 3 percent of the samples were randomly selected and re-genotyped by direct sequencing. The regenotyping and SNaPshot results were in complete accordance with original results.
Table 2

Amplification and extension primers of FUT2 and FUT3.

SNPAmplification Primer (5′→3′)Size (bp)Conc.(μM)Extension primer (5′→3′)Size (bp)Conc. (μM)
FUT2 rs281377F:TCAACATCAAAGGCACTGGGACC R:TGGCGGAGGTGGTGGTAGAA3382.518T-TGGCAGAACTACCACCTGAA381
FUT2 rs1047781F:TCAACATCAAAGGCACTGGGACC R:TGGCGGAGGTGGTGGTAGAA3382.538T-TGGAGGAGGAATACCGCCAC581
FUT2 rs601338F:TCAACATCAAAGGCACTGGGACC R:TGGCGGAGGTGGTGGTAGAA3382.5CACCGGCTACCCCTGCTCCT201
FUT3 rs28362459F:AAGAAACACACAGCCACCAGCAG R:AATGACCCTCACTCCTCTCTCCTCT137131T-GCGCCGCTGTCTGGCCGCAC511
FUT3 rs3745635F:GGCTGAGTCCGGCTTCCAGTT R:TATCATGTCCAACCCTAAGTCACGC28015T-CCGACATCTTCACGCCCTAC251
FUT3 rs3894326F:AGGTCCCTAGCAGGCAAGTCTTC R:CTGGGCACTGGATTTCTGCAAGG254121T-CAGGTACCAGACGGTGCGCAGCA441

Bold characters refer to the 5’ poly-thymidine tail.

Bold characters refer to the 5’ poly-thymidine tail.

Immunohistochemistry

For immunohistochemical analysis, formalin-fixed paraffin-embedded tissue sections were de-paraffinized with xylene and rehydrated with ethanol solutions and distilled water. Antigen retrieval was performed by heating the sections in EDTA antigen retrieval buffer (pH 9.0) at 99°C for 25 min. Then the slides were washed in PBS (pH 7.4) three times for 5 min. After blocking in endogenous peroxidase with 3% hydrogen peroxide solution at room temperature for 25 min, the slides were again washed in PBS (pH 7.4) three times for 5 min. To block unspecific antibody binding, sections were incubated with 3% BSA (Solarbio, Beijing, China) for 30 min. Sections were then incubated overnight at 4°C in PBS (pH 7.4) containing primary antibodies, blood group Lewis a and b antibodies (Catalog number: sc-51512 and sc-51513, Santa Cruz Biotech, Texas, U.S.A.) at 1:20 in PBS (pH 7.4). Sections were washed three times in PBS then incubated with polyclonal goat anti-mouse immunoglobulins/HRP (Dako, Glostrup, Denmark) at room temperature for 50 min. The the slides were rinsed in PBS three times for 5 min and HRP was added. Rabbit/Mouse (DAB+). Harris staining was performed to highlight the nucleus of cells. Lewis antigen expression was evaluated quantitatively using the Image Pro Plus 6.0 analysis system (Media Cybernetics, Silver Spring, MD) by calculating the mean density, which was integrated optical density (IOD) divided by area of interest [29]. Three 200X fields under microscope of each slide were randomly selected and the mean density was obtained for further statistic analysis.

Statistical Analysis

Hardy-Weinberg equilibrium for genotypes was evaluated by chi-square test both in UC patients and the controls. Either chi-square or Fisher’s exact test was applied to compare categorical variables such as alleles and genotypes. Unconditional logistic regression analysis was employed to investigate the allelic and genotypic distributions in UC patients, stratified by their clinical characteristics. Covariants included age, gender, smoking, lesion location and severity of UC. Linkage disequilibrium (LD) was estimated and visualized by Haploview 4.2. Haplotypes were reconstructed and haplotype frequencies were calculated by Phase 2.1 software [30]. Mann-Whitney U-test was applied to compare expression of Lewis antigens. All statistical data were input into SPSS 17.0 software (SPSS for Windows version 17.0, Chicago, IL, USA). A two-tailed P value less than 0.05 was considered significant.

Results

Comparison of alleles and genotypes of FUT2 and FUT3 between UC patients and controls

In this study, the genotype distributions of FUT2 and FUT3 were shown to be in good agreement with Hardy-Weinberg equilibrium both in UC patients and the controls (all P>0.05). The allele and genotype frequencies of SNPs in FUT2 did not differ significantly between UC patients and the controls (all P>0.05). However, the frequencies of mutant allele (A) and genotype (GA+AA) in FUT3 (rs3745635) were higher in UC patients than the controls (P = 0.016, 95%CI: 1.339–1.699; P = 0.038, 95%CI: 1.330–1.742, respectively). In addition, the most common homozygous mutation of FUT2 (rs601338), which led to nonsecretors in Caucasians, was not observed in our study. Several healthy controls (17.3%) were homozygous for FUT2 (rs1047781 T), thus nonsecretors (Table 3, Dataset in S1 Dataset).
Table 3

Allelic and genotypic distributions of FUT2 and FUT3 between UC patients and the controls.

Genotype/alleleControls(580) n(%)UC (485)n(%)OR (95%CI)P
FUT2 rs281377
TT441(76.0)356(73.4)
TC126(21.7)114(23.5)
CC13(2.2)15(3.1)
TC+CC139(24.0)129(26.6)0.871(1.150–1.517)0.324
allele C152(13.1)144(14.8)0.904(1.156–1.478)0.247
FUT2 rs1047781
AA160(27.6)155(32.0)
AT314(54.1)247(50.9)
TT106(18.3)83(17.1)
AT+TT420(72.4)330(68.0)0.623(0.811–1.056)0.119
allele T526(45.3)413(42.6)0.753(0.894–1.061)0.200
FUT2 rs601338
GG575(99.1)479(98.8)
GA5(0.9)6(1.2)
AA0(0)0(0)
GA+AA5(0.9)6(1.2)0.437(1.441–4.749)0.547
allele A5(0.4)6(0.6)0.437(1.438–4.726)0.548
FUT3 rs28362459
TT332(57.2)281(57.9)
TG219(37.8)174(35.9)
GG29(5.0)30(6.2)
TG+GG248(42.8)204(42.1)0.761(0.972–1.241)0.819
allele G277(23.9)234(24.1)0.830(1.013–1.237)0.895
FUT3 rs3745635
GG435(75.0)336(69.3)
GA136(23.4)133(27.4)
AA9(1.6)16(3.3)
GA+AA145(25.0)149(30.7)1.016(1.330–1.742)0.038
allele A154(13.3)165(17.0)1.055(1.339–1.699)0.016
FUT3 rs3894326
TT471(81.2)406(83.7)
TA105(18.1)76(15.7)
AA4(0.7)3(0.6)
TA+AA109(18.8)79(16.3)0.611(0.841–1.156)0.286
allele A113(9.7)82(8.5)0.635(0.856–1.153)0.305

Haplotype analysis of FUT2 and FUT3

Two LD blocks were presented as follows: block rs281377-rs1047781 in FUT2 (D' = 0.96, r2 = 0.11) and block rs3894326-rs3745635-rs28362459 in FUT3 [rs3894326/rs3745635 (D' = 1, r2 = 0.01), rs3894326/rs28362459 (D' = 0.86, r2 = 0.23), rs3745635/rs28362459 (D' = 0.92, r2 = 0.47)] (Fig 1). Furthermore, we conducted a haplotype analysis in all study subjects to investigate whether any specific haplotype would confer risk of or protection from UC. No haplotypes differed significantly between UC patients and the controls (all P>0.05, Table 4).
Fig 1

Linkage disequilibrium patterns of FUT2 and FUT3 in Chinese Han populations.

Numbers indicated the percentage of D' between 2 SNPs and in the dark area which have no digital represents D' = 1. Dark color indicated strong connection. Block 1 illustrated linkage disequilibrium in the 3 SNP in FUT3, and block 2 showed that rs281377 was in linkage disequilibrium with rs1047781 in FUT2.

Table 4

Haplotype frequencies of FUT2 and FUT3 in patients with UC and the controls.

GroupsFUT2 (rs281377-rs1047781)FUT3 (rs3894326- rs3745635-rs28362459)
TTTACATGTTAGAGG
UC0.4250.4270.1480.7330.1580.071
Controls0.4500.4190.1270.7520.1290.093

No positive results were obtained for each haplotype of FUT2 and FUT3 between UC patients and the controls (all P >0.05). The haplotype frequencies lower than 0.030 were not presented in the table.

Linkage disequilibrium patterns of FUT2 and FUT3 in Chinese Han populations.

Numbers indicated the percentage of D' between 2 SNPs and in the dark area which have no digital represents D' = 1. Dark color indicated strong connection. Block 1 illustrated linkage disequilibrium in the 3 SNP in FUT3, and block 2 showed that rs281377 was in linkage disequilibrium with rs1047781 in FUT2. No positive results were obtained for each haplotype of FUT2 and FUT3 between UC patients and the controls (all P >0.05). The haplotype frequencies lower than 0.030 were not presented in the table.

Association between FUT2 and FUT3 polymorphisms and clinical characteristics of patients with UC

Unconditional logistic regression analysis was used to evaluate the associations between FUT2 and FUT3 polymorphisms and clinical characteristics of UC patients. Covariants included age, gender, smoking, lesion location and severity of UC. The frequencies of mutant allele (G) and genotype (TG+GG) of FUT3 (rs28362459) were significantly lower in patients with extensive colitis than in those with distal colitis (P<0.001, 95%CI: 0.503–0.742; P = 0.001, 95%CI: 0.567–0.786, respectively). The frequencies of mutant allele (A) and genotype (GA+AA) of FUT3 (rs3745635) in patients with extensive colitis were significantly lower than in patients with distal colitis (P = 0.006, 95%CI: 0.553–0.845; P = 0.011, 95%CI: 0.621–0.900, respectively) (Table 5). However, none of the six SNPs of FUT2 and FUT3 were significantly associated with UC severity in this sample (all P>0.05).
Table 5

Association of FUT2 and FUT3 polymorphisms with clinical characteristics of UC patients.

Genotype/AlleleDistal colitis(n = 311)(%)Extensive colitis(n = 174)(%)OR(95%CI)P
FUT2 rs281377
TT231(74.3)125(71.8)
TC+CC80(25.7)49(28.2)0.746(1.132–1.717)0.560
T allele532(85.5)294(84.5)
C allele90(14.5)54(15.5)0.753(1.086–1.566)0.660
FUT2 rs1047781
AA90(28.9)65(37.4)
AT+TT221(71.1)109(62.6)0.461(0.683–1.012)0.057
A allele346(55.6)211(60.6)
T allele276(44.4)137(39.4)0.623(0.814–1.063)0.131
FUT2 rs601338
GG308(99.0)171(98.3)
GA+AA3(1.0)3(1.7)0.360(1.801–9.022)0.468
G allele619(99.5)345(99.1)
A allele3(0.5)3(0.9)0.360(1.794–8.938)0.469
FUT3 rs28362459
TT162(52.1)119(68.4)
TG+GG149(47.9)55(31.6)0.340(0.503–0.742)0.000
T allele450(72.3)286(82.2)
G allele172(27.7)62(17.8)0.409(0.567–0.786)0.001
FUT3 rs3745635
GG202(65.0)134(77.0)
GA+AA109(35.0)40(23.0)0.362(0.553–0.845)0.006
G allele502(80.7)303(87.1)
A allele120(19.3)45(12.9)0.429(0.621–0.900)0.011
FUT3 rs3894326
TT253(81.4)153(87.9)
TA+AA58(18.6)21(12.1)0.350(0.599–1.025)0.060
T allele562(90.4)326(93.7)
A allele60(9.6)22(6.3)0.381(0.632–1.050)0.074

The covariants also included sex, age of onset, smoking, severity of the disease. Nevertheless, these covariants did not affect the allelic and genotypic distributions of FUT2 and FUT3 in UC patients and the controls.

The covariants also included sex, age of onset, smoking, severity of the disease. Nevertheless, these covariants did not affect the allelic and genotypic distributions of FUT2 and FUT3 in UC patients and the controls.

Expression of Lewis a and b antigens in the sigmoid colon

We used immunohistochemical staining techniques to investigate expression of Lewis a and b antigens in the sigmoid colon of 7 UC patients and 7 patients with benign colonic polyps. Lewis a and b were expressed in the sigmoid colon of all studied samples, regardless of the FUT2 or FUT3 genotype (Fig 2, Table 6). In the normal mucosa of patients with benign colonic polyps, Lewis a was mostly expressed in the epithelium, while expression of Lewis b was observed in the cells and extracellular matrix. Immunohistochemical staining of Lewis a indicated increased expression in the cryptic epithelium of inflammatory lesions in UC patients than the normal mucosa of patients with benign colonic polyps (P = 0.028), although there was no difference of Lewis a expression in surface epithelium between the two groups. Notably, the extent of Lewis a staining did not differ significantly between inflammatory lesions and adjacent non-inflammatory mucosa of UC patients. In addition, the expression of Lewis b did not differ significantly among the inflammatory lesions, adjacent non-inflammatory mucosa of UC patients and normal control mucosa.
Fig 2

Representative Sigmoid Colon specimens of UC patients and patients with benign colonic polyps.

Expression of Lewis a antigen (a-c) and Lewis b antigen (d-f) in the sigmiod specimens of inflammatory and adjacent non-inflammatory tissue of UC patients and normal controls. Samples a, b, d, e were derived from patient 5, described in Table 6. Samples c and f were derived from normal tissue of patients with benign colonic polyps. Immunohistochemical staining indicated increased expression of Lewis a antigen in the cryptic epithelium in inflammatory lesions from UC patients and normal mucosa from patients with benign colonic polyps (see arrows in a-c). Expression in the epithelium did not differ dramatically between UC patients and patients with benign colonic polyps. Expression of Lewis b antigen did not differ dramatically between the three groups (d–f).

Table 6

Demographic characteristics of UC patients for immunohistochemistry study.

CaseSexAgeSmo-kingLesion locationDisease severityFUT2 GenotypeFUT3 Genotype
1Male56yesDistalMildFUT2 rs1047781 ATFUT2 rs281377 CTFUT3 rs28362459 GTFUT3 rs3894326 AT
2Female45noDistalSevereFUT2 rs1047781 TTWild type
3Female22noExtensiveMildWild typeFUT3 rs28362459 GT
4Male42noDistalMildWild typeWild type
5Male47yesDistalIntermediateWild typeWild type
6Female42noDistalIntermediateWild typeWild type
7Female51noExtensiveIntermediateWild typeWild type

Representative Sigmoid Colon specimens of UC patients and patients with benign colonic polyps.

Expression of Lewis a antigen (a-c) and Lewis b antigen (d-f) in the sigmiod specimens of inflammatory and adjacent non-inflammatory tissue of UC patients and normal controls. Samples a, b, d, e were derived from patient 5, described in Table 6. Samples c and f were derived from normal tissue of patients with benign colonic polyps. Immunohistochemical staining indicated increased expression of Lewis a antigen in the cryptic epithelium in inflammatory lesions from UC patients and normal mucosa from patients with benign colonic polyps (see arrows in a-c). Expression in the epithelium did not differ dramatically between UC patients and patients with benign colonic polyps. Expression of Lewis b antigen did not differ dramatically between the three groups (d–f). One UC patient who carried homozygous mutation of FUT2 (rs1047781) expressed same levels of Lewis a and b antigens. This might indicate that FUT2 genotypes have a minimal effect on expression of Lewis a and b antigens. We also noticed that expression of Lewis a and b antigen was decreased in one UC patient carrying mutant genotypes of FUT3 (rs28362459 GT, rs3894326 AT) and FUT2 (1047781 AT, rs281377 CT).

Discussion

In this study, we investigated the frequency of mutations in FUT2 and FUT3 in Chinese patients with UC and healthy controls. In this population we found that FUT2 polymorphisms were not significantly associated with UC. However, the frequencies of mutant allele (A) and genotype (GA+AA) of FUT3 (rs3745635) were higher in UC patients than in the controls. Furthermore, stratified analyses also indicated that the mutant alleles and genotypes of FUT3 (rs28362459 and rs3745635) were more common in patients with distal colitis than those with extensive colitis. These findings suggested that mutations in FUT3 not only are associated with UC, but also might affect the location of lesions. To our knowledge, the role of FUT3 in UC has not previously been reported. However, recent studies have linked several mutations in FUT3 to the risk of colon cancer [31], peptic ulcer, atrophic gastritis [32,33], Norovirus infection [34], type 2 diabetes [35] and coronary heart disease [36]. Moreover, the products of FUT3, Lewis a and b antigen, are involved in host-microbial interactions [6-9]. Next, we used immunohistochemistry to evaluate expression of Lewis a and b antigens in the sigmoid colon of UC patients and patients with benign colonic polyps. In our study, Lewis a and b were expressed in the sigmoid colon of all studied samples, including one UC patient (case 2) who carried homozygous mutation of FUT2 rs1047781. This might indicate that the FUT2 genotypes have a minimal effect on expression of Lewis a and b antigens. Notably, expression of Lewis a and b antigen remained unchanged in one UC patient (case 3) with mutant FUT3 (rs28362459) genotype GT, while decreased in one UC patient (case 1) carrying mutant genotypes of FUT3 (rs28362459 GT, rs3894326 AT) and FUT2 (1047781 AT, rs281377 CT). These observations suggested that heterozygous mutation of rs3745635 reduced the function of α-(1,3/4)-fucosyltransferase more significantly than rs28362459. These observations may suggest a cumulative effect of FUT3 mutations on its expression. In comparison to healthy control samples, expression of Lewis a was higher in the cryptic epithelium in both inflammatory lesions and non-inflammatory tissue from UC patients, although no difference was found in surface epithelium between these groups. This finding suggested the potential role of Lewis a antigen in the pathogenesis of UC. Notably, the finding that expression of Lewis a antigen was also increased in non-inflammatory tissue might indicate that Lewis a antigen expression was upregulated before inflammation occurred. However, the sample size involved in the genotype-phenotype study is too small to draw any precise conclusions. Studies involving a larger number of patients and genotypes will be required to illustrate the genotype-phenotype effect of the two genes. Lewis antigens have previously been implicated in intestinal microbiota composition [6, 21, 34]. The intestinal microbiota of individuals with negative Lewis blood groups were recently reported to contain a less rich and diverse range of bacteria than those with Lewis a phenotype [21]. In addition, fucose released from Lewis antigens was reported to play a key role in the pathogenicity and metabolism of enterohaemorrhagic Escherichia coli (EHEC) [9]. Some studies have previously explored the association between FUT2 polymorphisms and IBD. McGovern et al. found that in a Caucasian population non-secretion, caused by a FUT2 (rs601338) polymorphism, was associated with CD, but not UC. However, in a Finnish population the wild GG genotype of FUT2 (rs601338) was associated with enhanced risk of UC [24]. And in a Chinese Han population mutations in FUT2 (rs281377 and rs601338) predisposed patients to UC, while FUT2 (rs1047781 and rs601338) polymorphisms were associated with UC in Uyghur population from northwest China [37]. In this study we found no association between FUT2 polymorphisms and UC. Although our finding may indicate the absence of association between UC and FUT2 polymorphisms in Chinese population, the conclusions are limited by the relatively small sample size analyzed in this study. Given the multifactorial nature of UC, many rare genetic variants may contribute to its development, and a wide range of rare variants, or the potential dependency of multiple variants, is not easily identified in these relatively small sample sizes. Our results, however, suggested that mutations in FUT3 and its intestinal expression might be associated with UC susceptibility in Chinese patients. Studies involving larger cohort of UC patients will be required to validate the role of FUT3 in UC.

Individual genotype distributions of FUT2 and FUT3 in UC patients and the controls.

(XLSX) Click here for additional data file.
  37 in total

1.  A comparison of bayesian methods for haplotype reconstruction from population genotype data.

Authors:  Matthew Stephens; Peter Donnelly
Journal:  Am J Hum Genet       Date:  2003-10-20       Impact factor: 11.025

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Authors:  J D Rioux; M S Silverberg; M J Daly; A H Steinhart; R S McLeod; A M Griffiths; T Green; T S Brettin; V Stone; S B Bull; A Bitton; C N Williams; G R Greenberg; Z Cohen; E S Lander; T J Hudson; K A Siminovitch
Journal:  Am J Hum Genet       Date:  2000-04-21       Impact factor: 11.025

3.  Expression of H type 1 antigen of ABO histo-blood group in normal colon and aberrant expressions of H type 2 and H type 3/4 antigens in colon cancer.

Authors:  N Fujitani; Y Liu; S Toda; K Shirouzu; T Okamura; H Kimura
Journal:  Glycoconj J       Date:  2000-05       Impact factor: 2.916

4.  Association study of FUT2 (rs601338) with celiac disease and inflammatory bowel disease in the Finnish population.

Authors:  A S Parmar; N Alakulppi; P Paavola-Sakki; K Kurppa; L Halme; M Färkkilä; U Turunen; M Lappalainen; K Kontula; K Kaukinen; M Mäki; K Lindfors; J Partanen; P Sistonen; J Mättö; P Wacklin; P Saavalainen; E Einarsdottir
Journal:  Tissue Antigens       Date:  2012-10-18

5.  Helicobacter pylori SabA adhesin in persistent infection and chronic inflammation.

Authors:  Jafar Mahdavi; Berit Sondén; Marina Hurtig; Farzad O Olfat; Lina Forsberg; Niamh Roche; Jonas Angstrom; Thomas Larsson; Susann Teneberg; Karl-Anders Karlsson; Siiri Altraja; Torkel Wadström; Dangeruta Kersulyte; Douglas E Berg; Andre Dubois; Christoffer Petersson; Karl-Eric Magnusson; Thomas Norberg; Frank Lindh; Bertil B Lundskog; Anna Arnqvist; Lennart Hammarström; Thomas Borén
Journal:  Science       Date:  2002-07-26       Impact factor: 47.728

6.  ABO histo-blood group might modulate predisposition to Crohn's disease and affect disease behavior.

Authors:  Diego Forni; Isabelle Cleynen; Marc Ferrante; Andrea Cassinotti; Rachele Cagliani; Sandro Ardizzone; Severine Vermeire; Maria Fichera; Marta Lombardini; Giovanni Maconi; Roberto de Franchis; Rosanna Asselta; Mara Biasin; Mario Clerici; Manuela Sironi
Journal:  J Crohns Colitis       Date:  2013-11-21       Impact factor: 9.071

7.  Campylobacter jejuni binds intestinal H(O) antigen (Fuc alpha 1, 2Gal beta 1, 4GlcNAc), and fucosyloligosaccharides of human milk inhibit its binding and infection.

Authors:  Guillermo M Ruiz-Palacios; Luz Elena Cervantes; Pilar Ramos; Bibiana Chavez-Munguia; David S Newburg
Journal:  J Biol Chem       Date:  2003-01-31       Impact factor: 5.157

8.  Fucose sensing regulates bacterial intestinal colonization.

Authors:  Alline R Pacheco; Meredith M Curtis; Jennifer M Ritchie; Diana Munera; Matthew K Waldor; Cristiano G Moreira; Vanessa Sperandio
Journal:  Nature       Date:  2012-11-18       Impact factor: 49.962

9.  Faecal microbiota composition in adults is associated with the FUT2 gene determining the secretor status.

Authors:  Pirjo Wacklin; Jarno Tuimala; Janne Nikkilä; Harri Mäkivuokko; Noora Alakulppi; Pia Laine; Mirjana Rajilic-Stojanovic; Lars Paulin; Willem M de Vos; Jaana Mättö
Journal:  PLoS One       Date:  2014-04-14       Impact factor: 3.240

10.  Variation at ABO histo-blood group and FUT loci and diffuse and intestinal gastric cancer risk in a European population.

Authors:  Eric J Duell; Catalina Bonet; Xavier Muñoz; Leila Lujan-Barroso; Elisabete Weiderpass; Marie-Christine Boutron-Ruault; Antoine Racine; Gianluca Severi; Federico Canzian; Cosmeri Rizzato; Heiner Boeing; Kim Overvad; Anne Tjønneland; Marcial Argüelles; Emilio Sánchez-Cantalejo; Saioa Chamosa; José María Huerta; Aurelio Barricarte; Kay-Tee Khaw; Nick Wareham; Rutch C Travis; Antonia Trichopoulou; Dimitrios Trichopoulos; Nikos Yiannakouris; Domenico Palli; Claudia Agnoli; Rosario Tumino; Alessio Naccarati; Salvatore Panico; H Bas Bueno-de-Mesquita; Peter D Siersema; Petra H M Peeters; Bodil Ohlsson; Björn Lindkvist; Ingegerd Johansson; Weimin Ye; Matthias Johansson; Claus Fenger; Elio Riboli; Núria Sala; Carlos A González
Journal:  Int J Cancer       Date:  2014-07-01       Impact factor: 7.396

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1.  Expression of Lewis-a glycans on polymorphonuclear leukocytes augments function by increasing transmigration.

Authors:  Jennifer C Brazil; Ronen Sumagin; Sean R Stowell; Goo Lee; Nancy A Louis; Richard D Cummings; Charles A Parkos
Journal:  J Leukoc Biol       Date:  2017-06-09       Impact factor: 4.962

2.  Correlations of FUT3 gene polymorphisms with colon polyps.

Authors:  Xiaotian Hu; Fang Chen; Wenjuan Ji; Yingying Wang
Journal:  Cell Cycle       Date:  2021-12-22       Impact factor: 4.534

3.  Host genetic variation in mucosal immunity pathways influences the upper airway microbiome.

Authors:  Catherine Igartua; Emily R Davenport; Yoav Gilad; Dan L Nicolae; Jayant Pinto; Carole Ober
Journal:  Microbiome       Date:  2017-02-01       Impact factor: 14.650

4.  A cross-sectional comparative study of gut bacterial community of Indian and Finnish children.

Authors:  Shreyas V Kumbhare; Himanshu Kumar; Somak P Chowdhury; Dhiraj P Dhotre; Akihito Endo; Jaana Mättö; Arthur C Ouwehand; Samuli Rautava; Ruchi Joshi; Nitinkumar P Patil; Ravindra H Patil; Erika Isolauri; Ashish R Bavdekar; Seppo Salminen; Yogesh S Shouche
Journal:  Sci Rep       Date:  2017-09-05       Impact factor: 4.379

5.  FUT2 genetic variants as predictors of tumor development with hepatocellular carcinoma.

Authors:  Chih Tien Chen; Wen Ying Liao; Chia Chun Hsu; Kuan Chun Hsueh; Shun Fa Yang; Ying Hock Teng; Yung Luen Yu
Journal:  Int J Med Sci       Date:  2017-07-19       Impact factor: 3.738

6.  Specific Norovirus Interaction with Lewis x and Lewis a on Human Intestinal Inflammatory Mucosa during Refractory Inflammatory Bowel Disease.

Authors:  Georges Tarris; Alexis de Rougemont; Marie Estienney; Maeva Charkaoui; Thomas Mouillot; Bernard Bonnotte; Christophe Michiels; Laurent Martin; Gaël Belliot
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7.  Gut microbiota-mediated lysophosphatidylcholine generation promotes colitis in intestinal epithelium-specific Fut2 deficiency.

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Review 9.  An update on vitamin B12-related gene polymorphisms and B12 status.

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10.  Systematic sequence analysis of the FUT3 gene identifies 11 novel alleles in the Sindhi and Punjabi populations from Pakistan.

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